View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_50 (Length: 274)
Name: NF20919_low_50
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_50 |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 14149970 - 14149711
Alignment:
| Q |
1 |
gcatccgtatcgtgaaggagatttgaacagagtattttcttgttgcggctacctcaagaaaagnnnnnnnn-ggaaagcattggagcaccgatgataaat |
99 |
Q |
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| T |
14149970 |
gcatccgtatcgtgaaggagatttgaacagagtattttcttgttgcggctacctcaagaaaagaaaaaaaaaggaaagcattggagcaccgatgataaat |
14149871 |
T |
|
| Q |
100 |
gttattgatcatgtcgttgatgctgaagaccatgcacaattggttgcttccttgtcaaattgaggaatttaaaaaagcaatgttttctaagcagcctaac |
199 |
Q |
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| T |
14149870 |
gttattgatcatgtcgttgatgctgaagaccatgcacaattagttgcttccttgtcaaattgaggaatttaaaaaagcaatgttttctaagcagcctaac |
14149771 |
T |
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| Q |
200 |
aaatgtcctggtcatgatggttttaatccatgattttatcagcagtcctggaatatatgt |
259 |
Q |
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| T |
14149770 |
aaatgtcctggtcatgatggttttaatccatgattttatcagcagtcctggaatatatgt |
14149711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 219
Target Start/End: Complemental strand, 25752644 - 25752589
Alignment:
| Q |
164 |
gaatttaaaaaagcaatgttttctaagcagcctaacaaatgtcctggtcatgatgg |
219 |
Q |
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| T |
25752644 |
gaatttaaagaagcaatgttttccatgcagcctgacaaatgtccgggtcctgatgg |
25752589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 243
Target Start/End: Complemental strand, 28164687 - 28164608
Alignment:
| Q |
164 |
gaatttaaaaaagcaatgttttctaagcagcctaacaaatgtcctggtcatgatggttttaatccatgattttatcagca |
243 |
Q |
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| T |
28164687 |
gaatttaaagaagcaatgtttttcatgcagcctgacaaatgtccaggtcctgatggattcaatcctggattctatcagca |
28164608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 164 - 243
Target Start/End: Original strand, 34932478 - 34932557
Alignment:
| Q |
164 |
gaatttaaaaaagcaatgttttctaagcagcctaacaaatgtcctggtcatgatggttttaatccatgattttatcagca |
243 |
Q |
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||||||||| ||||||||||||| | ||| ||| |||||||||| |||| |||||| || ||||| |||| |||||||| |
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| T |
34932478 |
gaatttaaagaagcaatgttttccatgcaacctgacaaatgtccaggtcctgatggattcaatcctggattctatcagca |
34932557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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