View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_52 (Length: 274)
Name: NF20919_low_52
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_52 |
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Alignment Details
Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 7 - 209
Target Start/End: Complemental strand, 10725175 - 10724973
Alignment:
| Q |
7 |
tccaacaatatacaacttaatcagaagaagggttctgcaaccgaatatatctctttatttaggaggttgtgggtttgaagagaatattgatcacattttc |
106 |
Q |
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| T |
10725175 |
tccaacaacatacaacttaatcagaagaagggttttgcaaccgaatatatctctttgtttaggaggttgtgggtttgaagagaatattgatcacattttc |
10725076 |
T |
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| Q |
107 |
ttgcattgtggnnnnnnnggacaaatttggtacaatatttattcttggttatgattcgcttcaatcaagccagctaatgttcatacacatattcttcaat |
206 |
Q |
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||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10725075 |
ttgcattgtggtttttttggacaaatttggtacgatatttattcttggttatgattcgcttcaatcaagccagctaatgttcatacacatattcttcaat |
10724976 |
T |
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| Q |
207 |
tcc |
209 |
Q |
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||| |
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| T |
10724975 |
tcc |
10724973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 21498804 - 21498758
Alignment:
| Q |
7 |
tccaacaatatacaacttaatcagaagaagggttctgcaaccgaata |
53 |
Q |
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| T |
21498804 |
tccaacaattgacaacttaatcagaagaagggtgcttcaaccgaata |
21498758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 4e-41; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 7 - 258
Target Start/End: Original strand, 55416578 - 55416831
Alignment:
| Q |
7 |
tccaacaatatacaacttaatcagaagaag--ggttctgcaaccgaatatatctctttatttaggaggttgtgggtttgaagagaatattgatcacattt |
104 |
Q |
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| T |
55416578 |
tccaacaacatataacttaatcaggtggagaaggttctccaaccgaatacatctctttgttcaggcggttgtgagtttgaagagaatattgatcaccttt |
55416677 |
T |
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| Q |
105 |
tcttgcattgtggnnnnnnnggacaaatttggtacaatatttattcttggttatgattcgcttcaatcaagccagctaatgttcatacacatattcttca |
204 |
Q |
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| T |
55416678 |
tcttgcattgtgatttttttagacaaatttggtacgatatttatacttggctaggattgggttcagtcaggccagctaccgttcatgaacatattcttca |
55416777 |
T |
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| Q |
205 |
attccgtttatcaagtggcttctcaaaaaccatttcttctactttctacttgat |
258 |
Q |
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||| |||| | | || |||||| ||||| |||||||||||||||||||||||| |
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| T |
55416778 |
atttcgttcactaggtagcttctgaaaaatcatttcttctactttctacttgat |
55416831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 48988631 - 48988711
Alignment:
| Q |
18 |
acaacttaatcagaagaagggttctgcaaccgaatatatctctttatttaggaggttgtgggtttgaagagaatattgatca |
99 |
Q |
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| T |
48988631 |
acaacttaatcgga-gaaggattcttcaaccggacacatctctatgtttaggcggttgtaggttggaagagaatattgatca |
48988711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 258
Target Start/End: Complemental strand, 3452659 - 3452408
Alignment:
| Q |
7 |
tccaacaatatacaacttaatcagaagaagggttctgcaaccgaatatatctctttatttaggaggttgtgggtttgaagagaatattgatcacattttc |
106 |
Q |
| |
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|||||||| | |||||||||| || ||||||||| ||||||| |||| |||| ||| || || ||||||| ||||||||| ||||||||||| ||||| |
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| T |
3452659 |
tccaacaacaaacaacttaattaggagaagggttgtgcaaccaaatacatctttttgttcgggtggttgtgagtttgaagataatattgatcatcttttc |
3452560 |
T |
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| Q |
107 |
ttgcattgtggnnnnnnnggacaaatttggtacaatatttattcttggttatgattcgcttcaatcaagccagctaatgttcatacacatattcttcaat |
206 |
Q |
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| T |
3452559 |
ttgcattgcgatttttatggacaaatttggtacgatatttatacttggctacgattggcttcagtcaaaccaactactgttaatgaccatattcttcaat |
3452460 |
T |
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| Q |
207 |
tccgtttatcaagtggcttctcaaaaaccatttcttctactttctacttgat |
258 |
Q |
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| ||| | | || ||||||| ||||||||||||||||||||| ||||||| |
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| T |
3452459 |
tttgttaactaggtagcttctcgaaaaccatttcttctactttccacttgat |
3452408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 116
Target Start/End: Original strand, 16004434 - 16004543
Alignment:
| Q |
7 |
tccaacaatatacaacttaatcagaagaagggttctgcaaccgaatatatctctttatttaggaggttgtgggtttgaagagaatattgatcacattttc |
106 |
Q |
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| T |
16004434 |
tccaacaacagacgacttaattaggagaaaggtactgcaactgaatacatctctttgttcatgcggctgtggttttgaagagaacattgatcaatttttt |
16004533 |
T |
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| Q |
107 |
ttgcattgtg |
116 |
Q |
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| T |
16004534 |
tcgcattgtg |
16004543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 116
Target Start/End: Complemental strand, 13318433 - 13318324
Alignment:
| Q |
7 |
tccaacaatatacaacttaatcagaagaagggttctgcaaccgaatatatctctttatttaggaggttgtgggtttgaagagaatattgatcacattttc |
106 |
Q |
| |
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|||| ||||| |||||||||| || ||||||| ||||||||||||| ||||| | |||||| ||||||||||||||||||| |||||||| | || |
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| T |
13318433 |
tccagcaataaacaacttaattagctgaagggtactgcaaccgaatagatctccctgtttaggcagttgtgggtttgaagagaacattgatcatctgttt |
13318334 |
T |
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| Q |
107 |
ttgcattgtg |
116 |
Q |
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|||||||||| |
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| T |
13318333 |
ttgcattgtg |
13318324 |
T |
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