View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20919_low_56 (Length: 268)
Name: NF20919_low_56
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_56 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 19 - 256
Target Start/End: Complemental strand, 17347444 - 17347207
Alignment:
| Q |
19 |
ggtccaccaggaagaggaccagaaacacttcctgccgagttactataatgaagaatcgatgaagcattcagcacctgtgacgtgaaccttgttgttacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17347444 |
ggtccaccaggaagaggaccagaaacacttcctgccgagttactataatgaagaatcgatgaagcattcagcacctgtgacgtgaaccttgttgtgacaa |
17347345 |
T |
|
| Q |
119 |
caatgtagtagtcatttggtggttgatcagcagtaaccaatacagaatacgtctgccccaaatgaatgtcaagtgagtcataagtgttttgcagagtgtg |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17347344 |
caatgtagtagtcatgtggtggttgatcagcagtaaccaatacagaatacgtctgccccaaatgaatgtcaagtgagtcataagtgttttgcagagtgtg |
17347245 |
T |
|
| Q |
219 |
acttccttccacctcaacaagctttatcttatgccctt |
256 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17347244 |
acttccttccacctcaacaagctttatcttatgccctt |
17347207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 256
Target Start/End: Original strand, 17136372 - 17136609
Alignment:
| Q |
19 |
ggtccaccaggaagaggaccagaaacacttcctgccgagttactataatgaagaatcgatgaagcattcagcacctgtgacgtgaaccttgttgttacaa |
118 |
Q |
| |
|
|||||| ||||||||||||||||||| |||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17136372 |
ggtccagcaggaagaggaccagaaactcttctcgctgagtttctgtaatgaagaatcgatgaagcattcagcacctgtgacgtgaaccttgttgtgacaa |
17136471 |
T |
|
| Q |
119 |
caatgtagtagtcatttggtggttgatcagcagtaaccaatacagaatacgtctgccccaaatgaatgtcaagtgagtcataagtgttttgcagagtgtg |
218 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| |
|
|
| T |
17136472 |
caatgtagtagtcatgtggtggttgatcagcagtaaccaatacagaatacgtctgccccaaatgaatgtcaagtgagtcgtaaatgttttgcacagtgtg |
17136571 |
T |
|
| Q |
219 |
acttccttccacctcaacaagctttatcttatgccctt |
256 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17136572 |
acttccttccacctcaacaagcttcatcttatgccctt |
17136609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 135 - 256
Target Start/End: Original strand, 37091115 - 37091236
Alignment:
| Q |
135 |
tggtggttgatcagcagtaaccaatacagaatacgtctgccccaaatgaatgtcaagtgagtcataagtgttttgcagagtgtgacttccttccacctca |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||||||||| ||||| || |||||||||||||| || ||||| |||||||||| ||| |
|
|
| T |
37091115 |
tggtggttgatcagcagtaaccaatacagagtaactctgccccaaatgaatatcaagggaatcataagtgttttgtagtgtgtggattccttccacttca |
37091214 |
T |
|
| Q |
235 |
acaagctttatcttatgccctt |
256 |
Q |
| |
|
|| || || |||||||| |||| |
|
|
| T |
37091215 |
actagtttcatcttatgacctt |
37091236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University