View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20919_low_59 (Length: 254)
Name: NF20919_low_59
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_59 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14321069 - 14321312
Alignment:
| Q |
1 |
atgcttactgttttcctctggttttggccaattgctttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14321069 |
atgcttactgttttcctctggttttggccaattgctttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagt |
14321168 |
T |
|
| Q |
101 |
ttaaggggtgttttgtaacctttattgagtaaagggttcatccaaaaccaccctgttttagacaaaaatgacgaacaagcataaggactcaaagttctat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14321169 |
ttaaggggtgttttgtaacctttattgagtaaagggttcatccaaaaccaccctgttttagacaaaaatgacgaacaagcataaggactcaaagttctat |
14321268 |
T |
|
| Q |
201 |
cggtcgaaattgaccgatatgttgctactacatcggatattctt |
244 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14321269 |
cggtcgaaattgaccgatatgttgctactacatcggatattctt |
14321312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14304678 - 14304921
Alignment:
| Q |
1 |
atgcttactgttttcctctggttttggccaattgctttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagt |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
14304678 |
atgcttactgttttcctctggtttcggccaattgttttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagt |
14304777 |
T |
|
| Q |
101 |
ttaaggggtgttttgtaacctttattgagtaaagggttcatccaaaaccaccctgttttagacaaaaatgacgaacaagcataaggactcaaagttctat |
200 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| |||| |||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
14304778 |
ttaaggggtgtttggtagcctttattgagtaaaggattcagccaaaaccaccctgttttggacaaaaatgaagaatgggcataaggactcaaagttctat |
14304877 |
T |
|
| Q |
201 |
cggtcgaaattgaccgatatgttgctactacatcggatattctt |
244 |
Q |
| |
|
|| | ||||| || ||||||| ||||||||||||||||||||| |
|
|
| T |
14304878 |
cgattgaaatcgatggatatgtggctactacatcggatattctt |
14304921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 14282920 - 14283163
Alignment:
| Q |
1 |
atgcttactgttttcctctggttttggccaattgctttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
14282920 |
atgcttactattttcctctggttttggccaattgttttgaaaaagttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagt |
14283019 |
T |
|
| Q |
101 |
ttaaggggtgttttgtaacctttattgagtaaagggttcatccaaaaccaccctgttttagacaaaaatgacgaacaagcataaggactcaaagttctat |
200 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||||||||||||| |||| ||||||| ||||||| ||| ||||| |||||||||||||||||||||| |
|
|
| T |
14283020 |
ttaaggggtgtttggtaacctttattaagcaaagggttcatccaataccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctat |
14283119 |
T |
|
| Q |
201 |
cggtcgaaattgaccgatatgttgctactacatcggatattctt |
244 |
Q |
| |
|
|||| |||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
14283120 |
cggtggaaactgatggatatgttgctactacatcggatattctt |
14283163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 44349595 - 44349838
Alignment:
| Q |
1 |
atgcttactgttttcctctggttttggccaattgctttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||| ||| |||||||||||||||||||| ||||||||||||||||| | |||||||||| |
|
|
| T |
44349595 |
atgcttactgttttcctctggttttggccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaatatcttctagt |
44349694 |
T |
|
| Q |
101 |
ttaaggggtgttttgtaacctttattgagtaaagggttcatccaaaaccaccctgttttagacaaaaatgacgaacaagcataaggactcaaagttctat |
200 |
Q |
| |
|
|||||||| ||||||||||| ||||| | |||||||||||||||||||| ||||||| ||||||||||| |||| |||||||||||||||| ||| || |
|
|
| T |
44349695 |
ttaaggggagttttgtaaccgttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccat |
44349794 |
T |
|
| Q |
201 |
cggtcgaaattgaccgatatgttgctactacatcggatattctt |
244 |
Q |
| |
|
| |||| || ||| |||||| ||||||||||||||||||||| |
|
|
| T |
44349795 |
cagtcggaactgatgtatatgtcgctactacatcggatattctt |
44349838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 25885751 - 25885994
Alignment:
| Q |
1 |
atgcttactgttttcctctggttttggccaattgctttgaaaaagttcagacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagt |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| || |||| ||| |||||||||||||||||||| ||||||||||||||||| |||||||||||| |
|
|
| T |
25885751 |
atgcttactattttcctctggttttggccaattgtttataaaattttctgacattttttctgctctaaattcaagaggaagtgaaggaacatcttctagt |
25885850 |
T |
|
| Q |
101 |
ttaaggggtgttttgtaacctttattgagtaaagggttcatccaaaaccaccctgttttagacaaaaatgacgaacaagcataaggactcaaagttctat |
200 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||||||||||||||||| ||||||| ||||||||||| |||| |||||||||||||||| ||| || |
|
|
| T |
25885851 |
ttaaggggagttttgtaacctttattaatcaaagggttcatccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccat |
25885950 |
T |
|
| Q |
201 |
cggtcgaaattgaccgatatgttgctactacatcggatattctt |
244 |
Q |
| |
|
| || | || || |||||| ||||||||||||||||||||| |
|
|
| T |
25885951 |
cagttggaaccgatgtatatgtcgctactacatcggatattctt |
25885994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University