View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_6 (Length: 601)
Name: NF20919_low_6
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 560; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 560; E-Value: 0
Query Start/End: Original strand, 20 - 587
Target Start/End: Original strand, 43219640 - 43220207
Alignment:
| Q |
20 |
tatcacttttcacaaattcaacttcatatgtaaatgatatcctctcttgctctcttattggttgatacttatccaactcattgggacagtttatcgaaga |
119 |
Q |
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| T |
43219640 |
tatcacttttcacaaattcaacttcatatgtaaatgatatcctctcttgctctcttattggttgatacttatccaactcattgggacagtttattgaaga |
43219739 |
T |
|
| Q |
120 |
aatattatcatacatatgtaacttcgtcataacttcgggatcacgtttaacactacaaggaacaacatgaaacccaacaatttcaaatccagattccttc |
219 |
Q |
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| T |
43219740 |
aatattatcatacatatgtaacttcgtcataacttcgggatcccgtttaacactacaaggaacaacatgaaacccaacaatttcaaatccagattccttc |
43219839 |
T |
|
| Q |
220 |
ttcttatcagtttcagcaataacacccataccctcttccccagtaccaataatctcaacatcatttccttcatactcatgaaccaaaaccgtaaacttaa |
319 |
Q |
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| T |
43219840 |
ttcttatcagtttcagcaataacacccataccctcttccccagtaccaataatctcaacatcatttccttcatactcatgaaccaaaaccgtaaacttaa |
43219939 |
T |
|
| Q |
320 |
gatgattaataacataatccgcactcccatcagttggcgtatacccaataggaaaccccgtccactgaatcttaaccccattttgattcgcaaacctcat |
419 |
Q |
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| T |
43219940 |
gatgattaataacataatccgcactcccatcagttggcgtatacccaataggaaaccccgtccactgaatcttaaccccattttgattcgcaaacctcat |
43220039 |
T |
|
| Q |
420 |
aaccggcaaattatcaagaatcatattcacctgatacaaatcgcgggttctctgtttaaacagcttaacctcatgctcattcaacggggccgtagtacat |
519 |
Q |
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| T |
43220040 |
aaccggcaaattatcaagaatcatattcacctgatacaaatcgcgggttctctgtttaaacagcttaacctcatgctcattcaacggggccgtagtacat |
43220139 |
T |
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| Q |
520 |
aaataactcgactgattaacattcattttaaatagatacggcgagttatcaatctgatcacccataag |
587 |
Q |
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| T |
43220140 |
aaataactcgactgattaacattcattttaaatagatacggcgagttatcaatctgatcacccataag |
43220207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 102; Significance: 2e-50; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 7 - 500
Target Start/End: Complemental strand, 37071143 - 37070650
Alignment:
| Q |
7 |
gatggacatcatctatcacttttcacaaattcaacttcatatgtaaatgatatcctctcttgctctcttattggttgatacttatccaactcattgggac |
106 |
Q |
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| T |
37071143 |
gatggccatcttatatcacttttcacaaattcaacatcatatgtgaatgatatcctctcttgctcttttattacctggtatttgtcgagctcatttgggc |
37071044 |
T |
|
| Q |
107 |
agtttatcgaagaaatattatcatacatatgtaacttcgtcataacttcgggatcacgtttaacactacaaggaacaacatgaaacccaacaatttcaaa |
206 |
Q |
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| T |
37071043 |
agcttacagaagagatactatcatacattttgtgctttgccatggcttcggggtcatatttaatactacatgggacaacatgaaaaccaactatttcata |
37070944 |
T |
|
| Q |
207 |
tccagattccttcttcttatcagtttcagcaataacacccataccctcttccccagtaccaataatctcaacatcatttccttcatactcatgaaccaaa |
306 |
Q |
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| T |
37070943 |
cccagatgccttcttcttgtcagcttcagaaataatgcccaaaccttcctccccagtcccaataatttcgacccctctaccttcatattcatgaaccaat |
37070844 |
T |
|
| Q |
307 |
accgtaaacttaagatgattaataacataatccgcactcccatcagttggcgtatacccaataggaaaccccgtccactgaatcttaaccccattttgat |
406 |
Q |
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|| || || || || || ||||| | ||||| |||| ||||||| ||| || ||||||| ||| ||||||||||||| || |||||||||||||| |
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| T |
37070843 |
acagtgaatttcaggtggttaatgatgtaatctgcaccgccatcagatggagtgtacccaacagggtaccccgtccactggattttaaccccattttggc |
37070744 |
T |
|
| Q |
407 |
tcgcaaacctcataaccggcaaattatcaagaatcatattcacctgatacaaatcgcgggttctctgtttaaacagcttaacctcatgctcatt |
500 |
Q |
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| | | |||||||||| ||||| || ||||| ||||||||||| ||||||| ||| || ||||| ||||| | ||||| ||||| |||||||| |
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| T |
37070743 |
tagtatacctcataactggcaagttgtcaaggatcatattcacttgatacagatcacgagttctttgtttgagtagctttacctcgtgctcatt |
37070650 |
T |
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