View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_60 (Length: 252)
Name: NF20919_low_60
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_60 |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 12 - 232
Target Start/End: Complemental strand, 33115310 - 33115090
Alignment:
| Q |
12 |
agaagcaaagggtagccataacagttttgggatctttcccaaaagagagaccagaagcaagtgaagctatgaccataagcataagggtcattccataaac |
111 |
Q |
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| T |
33115310 |
agaaacaaagggtagccataacagttttgggatctttcccaaaagagagaccagaagcaagtgaagctatgaccataagcataagggtcattccataaac |
33115211 |
T |
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| Q |
112 |
tcgttttcttcccattttgtcaccaagccaaccaaagaaaagttgtcctgccagtgctccactgaaagcaacaccattgattgcagcagaaacattttct |
211 |
Q |
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| T |
33115210 |
tcgttttcttcccattttgtcaccaagccaaccaaagaaaagttgtcctgccagtgctccactgaaagcaacaccattgattgcagcagaaacattttct |
33115111 |
T |
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| Q |
212 |
ggtagagaaccaggtttgtta |
232 |
Q |
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||||||||||||||||||||| |
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| T |
33115110 |
ggtagagaaccaggtttgtta |
33115090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 83 - 156
Target Start/End: Complemental strand, 33109204 - 33109131
Alignment:
| Q |
83 |
accataagcataagggtcattccataaactcgttttcttcccattttgtcaccaagccaaccaaagaaaagttg |
156 |
Q |
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| T |
33109204 |
accataagcataagggttataccataaacttttttccttcctaatttgtcaccaagccaaccgaagaaaagttg |
33109131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 16175290 - 16175347
Alignment:
| Q |
115 |
ttttcttcccattttgtcaccaagccaaccaaagaaaagttgtcctgccagtgctcca |
172 |
Q |
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| T |
16175290 |
ttttcttcccattttgtccccaagccaaccaaagaataattggcctgctagtgttcca |
16175347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 189
Target Start/End: Original strand, 37315994 - 37316079
Alignment:
| Q |
104 |
ccataaactcgttttcttcccattttgtcaccaagccaaccaaagaaaagttgtcctgccagtgctccactgaaagcaacaccatt |
189 |
Q |
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| T |
37315994 |
ccataaactttttttcttcccattttgtccccaagccaaccaaagaaaagttggcctgctagagtgccacagagagcaacaccatt |
37316079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 189
Target Start/End: Complemental strand, 38884142 - 38884006
Alignment:
| Q |
53 |
aaagagagaccagaagcaagtgaagctatgaccataagcataagggtcattccataaactcgttttcttcccattttgtcaccaagccaaccaaagaaaa |
152 |
Q |
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| T |
38884142 |
aaagaaagaccagaaccaattgaacagataaccatcatcatgagggtcataccatagacttttttcctgcccatcttatcaccaagccagccaaagaaaa |
38884043 |
T |
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| Q |
153 |
gttgtcctgccagtgctccactgaaagcaacaccatt |
189 |
Q |
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|||| |||| |||| ||||| |||||| |||||||| |
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| T |
38884042 |
gttgccctgaaagtgttccacagaaagctacaccatt |
38884006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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