View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_61 (Length: 251)
Name: NF20919_low_61
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_61 |
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| [»] chr2 (3 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 234; Significance: 1e-129; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 14320844 - 14321077
Alignment:
| Q |
18 |
gaagttaaattgatgaacactaagtacttcaactgattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcgtactatctttccttgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14320844 |
gaagttaaattgatgaacactaagtacttcaactgattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcgtactatctttccttgat |
14320943 |
T |
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| Q |
118 |
gtgaaatcaacaaaactttgaatcaacaagggaccaacatacataacacaaagcctaatgactgcaatgaagcccgtgaaagctatttgtttccaaaaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14320944 |
gtgaaatcaacaaaactttgaatcaacaagggaccaacatacataacacaaagcctaatgactgcaatgaagcccgtgaaagctatttgtttccaaaaac |
14321043 |
T |
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| Q |
218 |
acctaaaaagggtaactccaactggatgcttact |
251 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
14321044 |
acctaaaaagggtaactccaactggatgcttact |
14321077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 14304453 - 14304686
Alignment:
| Q |
18 |
gaagttaaattgatgaacactaagtacttcaactgattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcgtactatctttccttgat |
117 |
Q |
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|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
14304453 |
gaagttgaattgatgaacactaagtacttcaacagattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttctgtgat |
14304552 |
T |
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| Q |
118 |
gtgaaatcaacaaaactttgaatcaacaagggaccaacatacataacacaaagcctaatgactgcaatgaagcccgtgaaagctatttgtttccaaaaac |
217 |
Q |
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| T |
14304553 |
gtgaaatcaacaaaactctgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtgaaaactatgtgtttccaaaaac |
14304652 |
T |
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| Q |
218 |
acctaaaaagggtaactccaactggatgcttact |
251 |
Q |
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| T |
14304653 |
acctaaaaagggtaactccaactggatgcttact |
14304686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 14282695 - 14282928
Alignment:
| Q |
18 |
gaagttaaattgatgaacactaagtacttcaactgattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcgtactatctttccttgat |
117 |
Q |
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|||||| || |||||| |||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
14282695 |
gaagttgaactgatgactactaagtacttcaagtgattttgccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgat |
14282794 |
T |
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| Q |
118 |
gtgaaatcaacaaaactttgaatcaacaagggaccaacatacataacacaaagcctaatgactgcaatgaagcccgtgaaagctatttgtttccaaaaac |
217 |
Q |
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||||||||||||||||| | |||||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| |||||||| ||||||||||||| |
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| T |
14282795 |
gtgaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaaagcttaatgattgcaaggaagcccgtaaaagctatgtgtttccaaaaac |
14282894 |
T |
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| Q |
218 |
acctaaaaagggtaactccaactggatgcttact |
251 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
14282895 |
acctaaaaagggtaactccaactggatgcttact |
14282928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 25885534 - 25885759
Alignment:
| Q |
26 |
attgatgaacactaagtacttcaactgattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcgtactatctttccttgatgtgaaatc |
125 |
Q |
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||||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25885534 |
attgatgaacactcagcacttcaactgattttgctgcaaaaaggatcaatatcaaaataataccttcactagtagtactatctttccttgatgtgaaatc |
25885633 |
T |
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| Q |
126 |
aacaaaactttgaatcaacaagggaccaacatacataacacaaagcctaatgactgcaatgaagcccgtgaaagctatttgtttccaaaaacacctaaaa |
225 |
Q |
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||||||||| |||||||||| ||||||| ||||||||||||||||||||| | ||||| |||||| ||||||||||| |||||||||||||||||||| |
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| T |
25885634 |
aacaaaactctgaatcaacagtggaccaatatacataacacaaagcctaatcattgcaaggaagccagtgaaagctatgtgtttccaaaaacacctaaat |
25885733 |
T |
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| Q |
226 |
agggtaactccaactggatgcttact |
251 |
Q |
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| T |
25885734 |
aaggctactataactggatgcttact |
25885759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 34 - 224
Target Start/End: Original strand, 44349386 - 44349576
Alignment:
| Q |
34 |
acactaagtacttcaactgattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcgtactatctttccttgatgtgaaatcaacaaaac |
133 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
44349386 |
acactcagtacttcaactgattttgctgcaaaaaggatcaatatcaaaataatatcttcactagtagtactatctttccttgatgtaaaatcaacaaaac |
44349485 |
T |
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| Q |
134 |
tttgaatcaacaagggaccaacatacataacacaaagcctaatgactgcaatgaagcccgtgaaagctatttgtttccaaaaacacctaaa |
224 |
Q |
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| T |
44349486 |
tctgaatcaacagtggaccaatatacataacacaaagcctaatcactgcaaggaagccagtgatagctatgtgtttccaaaaacacctaaa |
44349576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 184
Target Start/End: Original strand, 39666390 - 39666456
Alignment:
| Q |
118 |
gtgaaatcaacaaaactttgaatcaacaagggaccaacatacataacacaaagcctaatgactgcaa |
184 |
Q |
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||||||||||||||| ||||||| || | ||| |||||| |||||||| | ||||||||||| |||| |
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| T |
39666390 |
gtgaaatcaacaaaattttgaattaaaacgggtccaacaaacataacagacagcctaatgacagcaa |
39666456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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