View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_low_63 (Length: 250)

Name: NF20919_low_63
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_low_63
NF20919_low_63
[»] chr7 (3 HSPs)
chr7 (65-130)||(38551421-38551486)
chr7 (1-62)||(38551192-38551253)
chr7 (185-242)||(38551541-38551598)


Alignment Details
Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 130
Target Start/End: Original strand, 38551421 - 38551486
Alignment:
Q  65 aataaactatgtgtttctgtcttccatgcaacataatgtttgattcaataataatacaatgtcatg 130  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551421 aataaactatgtgtttctgtcttccatgcaacataatgtttgattcaataataatacaatgtcatg 38551486  T

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Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 38551192 - 38551253
Alignment:
Q  1 tacagccatgcctgtatttcaagtcaatactcggtcatttgcattcatatttatttccatga 62  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551192 tacagccatgcttgtatttcaagtcaatactcggtcatttgcattcatatttatttccatga 38551253  T

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Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 38551541 - 38551598
Alignment:
Q  185 gagttacggacggtgtacggatattcaaccaaacttcagagcaacactaacctatgct 242  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38551541 gagttacggacggtgtacggatattcaaccaaacttcagagcaacactaacctatgct 38551598  T

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