View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_64 (Length: 250)
Name: NF20919_low_64
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_64 |
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Alignment Details
Target: chr2 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 33806383 - 33806161
Alignment:
| Q |
18 |
gaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806383 |
gaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgc |
33806284 |
T |
|
| Q |
118 |
agaatgatatccgtaaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtcttt |
217 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806283 |
agaatgataaccgtaaaatcgttgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtcttt |
33806184 |
T |
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| Q |
218 |
gttatagcaattcattttctctg |
240 |
Q |
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||||| | ||||||||||||||| |
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| T |
33806183 |
gttatggaaattcattttctctg |
33806161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 33811921 - 33812143
Alignment:
| Q |
18 |
gaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33811921 |
gaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgc |
33812020 |
T |
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| Q |
118 |
agaatgatatccgtaaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtcttt |
217 |
Q |
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| T |
33812021 |
agaatgataaccgtaaaatcgttgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtcttt |
33812120 |
T |
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| Q |
218 |
gttatagcaattcattttctctg |
240 |
Q |
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||||| | ||||||||||||||| |
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| T |
33812121 |
gttatggaaattcattttctctg |
33812143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 242
Target Start/End: Original strand, 31027595 - 31027819
Alignment:
| Q |
18 |
gaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgc |
117 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||| |||||||||||| || ||||||||||||| |
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| T |
31027595 |
gaacctagtccaaataacttgacctatgttcttgagatcaaatcaggtaatgttattctttcagctggttacaaaactccacaaacatattggactatgc |
31027694 |
T |
|
| Q |
118 |
agaatgatatccgtaaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtcttt |
217 |
Q |
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|||| |||| ||||||||| || ||||||||||||||||||||||| ||||||||| |||| |||||||||||||| |||||||||||||||| |||||| |
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| T |
31027695 |
agaaggataaccgtaaaataatagataaggtcggccatgttgtggcgtttgcaaatctcagtgacaattcttggaggttctatgataacaataagtcttt |
31027794 |
T |
|
| Q |
218 |
gttatagcaattcattttctctgct |
242 |
Q |
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||||| ||||||||||||||||||| |
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| T |
31027795 |
gttatggcaattcattttctctgct |
31027819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 33801901 - 33801679
Alignment:
| Q |
18 |
gaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgc |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33801901 |
gaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgc |
33801802 |
T |
|
| Q |
118 |
agaatgatatccgtaaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtcttt |
217 |
Q |
| |
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||||||||| |||||||| ||| | ||| || |||||||||| ||||||||| |||| || ||||||||||| |||||||||||||||| |||||| |
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| T |
33801801 |
agaatgataaccgtaaaacgattaacaagaatggtgatgttgtggcttttgcaaatctcagtgataattcttggaggttctatgataacaataagtcttt |
33801702 |
T |
|
| Q |
218 |
gttatagcaattcattttctctg |
240 |
Q |
| |
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||||| |||||||||| |||||| |
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| T |
33801701 |
gttatggcaattcattgtctctg |
33801679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 49462562 - 49462784
Alignment:
| Q |
18 |
gaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgc |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |||| ||||||| |||||||||||||| |
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| T |
49462562 |
gaacctagttcaaataatttgacctatgttcttgagattaaatctggtaatgttgttctttctgctggttttaaaattccacaggtttattggactatgc |
49462661 |
T |
|
| Q |
118 |
agaatgatatccgtaaaatcattgataaggtcggccatgttgtggcatttgcaaatatcagggacaattcttggagattctatgataacaataggtcttt |
217 |
Q |
| |
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|| | |||| | | |||| ||||||||||| || |||||||||| | || ||| | || ||||||||||||||||| |||||| |||| | |||||| |
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| T |
49462662 |
aggaggataacaggaaaaccattgataaggatggtcatgttgtggtttcggcgaatcttagtgacaattcttggagattttatgatgacaagaagtcttt |
49462761 |
T |
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| Q |
218 |
gttatagcaattcattttctctg |
240 |
Q |
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||| | ||||||||||||||||| |
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| T |
49462762 |
gttgtggcaattcattttctctg |
49462784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 28 - 98
Target Start/End: Complemental strand, 7815187 - 7815117
Alignment:
| Q |
28 |
caaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactcca |
98 |
Q |
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||||||||||||||| |||| ||||||||||||||||| ||||| | ||||||||| |||||||||||||| |
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| T |
7815187 |
caaataacttgacctttgttattgagatcaaatctggtaatgttatactttcagcttgtttcaaaactcca |
7815117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 147
Target Start/End: Complemental strand, 10071391 - 10071262
Alignment:
| Q |
18 |
gaacctagttcaaataacttgacctatgttcttgagatcaaatctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgc |
117 |
Q |
| |
|
||||||| | ||||||||| ||||||||||||| |||| ||||||||| ||| | || |||| |||||||| ||||||||| |||||| | |||||||| |
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| T |
10071391 |
gaacctattccaaataactcgacctatgttcttcagataaaatctggtaatgctattgtttctgctggtttggaaactccactgacttactagactatgc |
10071292 |
T |
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| Q |
118 |
agaatgatatccgtaaaatcattgataagg |
147 |
Q |
| |
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|||| | || ||| |||| |||||||||| |
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| T |
10071291 |
agaagggtaaccgcaaaacaattgataagg |
10071262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 136
Target Start/End: Complemental strand, 2529715 - 2529639
Alignment:
| Q |
60 |
tctggtgatgttgttctttcagctggtttcaaaactccacagacttattggactatgcagaatgatatccgtaaaat |
136 |
Q |
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|||||| ||||| ||||||| | ||||| || |||||||| |||||||| ||||||| ||||||||||| ||||| |
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| T |
2529715 |
tctggtaatgttcttctttccacaggtttacaatctccacagccttattggtctatgcaaaatgatatccgaaaaat |
2529639 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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