View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_68 (Length: 240)
Name: NF20919_low_68
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_68 |
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| [»] chr2 (4 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 3e-87; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 33801409 - 33801639
Alignment:
| Q |
10 |
catcatcaactttcagaaattcaacagatctttttgattcatcattgcaaggagaggcaatacctggtttacaactaggaagaagaacaagaggacagct |
109 |
Q |
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| T |
33801409 |
catcatcaactttcagaaattcaacagatctttttgattcatcatcgcaaggagaggcaaaacctggtttacaactaggaagaagaacaagaggacagct |
33801508 |
T |
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| Q |
110 |
acacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcaccatttgatcca |
209 |
Q |
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| T |
33801509 |
acacatacggttgtttgagcatattccgtagggatcacaaggttctggtgtaccacaaggatctcttggtattcttagtgaagcatcactgtttgatcca |
33801608 |
T |
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| Q |
210 |
ccaccgttgagattagagaaagtaatgacac |
240 |
Q |
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| T |
33801609 |
gtaccgttgagattcgagaaagtaatgacac |
33801639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 31028099 - 31027866
Alignment:
| Q |
10 |
catcatcaactttcagaaattcaacagatctttttgatt---catcattgcaaggagaggcaatacctggtttacaactaggaagaagaacaagaggaca |
106 |
Q |
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| T |
31028099 |
catcatcagctttcagaaattctatagacttttttgatttatcatcatcacaaggagagacaaaacctggtttacaactaggaagaagaacatgaggaca |
31028000 |
T |
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| Q |
107 |
gctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcaccatttgat |
206 |
Q |
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| T |
31027999 |
gctacacgtacgtttgtttgcgcatatattgtagggatcacaaggttctggtgtaccacaataatcttgtggtattcttgttgaagaatcaccgtttgat |
31027900 |
T |
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| Q |
207 |
ccaccaccgttgagattagagaaagtaatgacac |
240 |
Q |
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| T |
31027899 |
ccaccaccgttgagattcgagaaagtaatgacac |
31027866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 33805876 - 33806112
Alignment:
| Q |
10 |
catcatcaactttcagaaattcaacagatctttttgattcatcattg---caaggagaggcaatacctggtttacaactaggaaga---agaacaagagg |
103 |
Q |
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| T |
33805876 |
catcatcagctttcagaaattcaatagacttttctgatttatcatcaacacaaggcgagacaaaacctggtttacaactacgatgatgaagaacagaagg |
33805975 |
T |
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| Q |
104 |
acagctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcaccattt |
203 |
Q |
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| T |
33805976 |
acagctacacctacggttatttgcacaaatgttgtaaggatcacaaggttctggtgtatcacaatgatcttgtggtattcttgttgaggaatcaccattt |
33806075 |
T |
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| Q |
204 |
gatccaccaccgttgagattagagaaagtaatgacac |
240 |
Q |
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| T |
33806076 |
gatccaccaccgttgagattagagaaaataatgacac |
33806112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 240
Target Start/End: Complemental strand, 33812428 - 33812192
Alignment:
| Q |
10 |
catcatcaactttcagaaattcaacagatctttttgattcatcattg---caaggagaggcaatacctggtttacaactaggaaga---agaacaagagg |
103 |
Q |
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| T |
33812428 |
catcatcagctttcagaaattcaatagacttttctgatttatcatcaacacaaggcgagacaaaacctggtttacaactacgatgatgaagaacagaagg |
33812329 |
T |
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| Q |
104 |
acagctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcaccattt |
203 |
Q |
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| T |
33812328 |
acagctacacctacggttatttgcacaaatgttgtaaggatcacaaggttctggtgtatcacaatgatcttgtggtattcttgttgaggaatcaccattt |
33812229 |
T |
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| Q |
204 |
gatccaccaccgttgagattagagaaagtaatgacac |
240 |
Q |
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| T |
33812228 |
gatccaccaccgttgagattagagaaaataatgacac |
33812192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 240
Target Start/End: Complemental strand, 49462972 - 49462833
Alignment:
| Q |
101 |
aggacagctacacatacggttgtttgagcatattctgtagggatcacaaggttctggtgtatcacaataatcttgtggtattcttgttgaggaatcacca |
200 |
Q |
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| T |
49462972 |
aggacagctacaccttcggttgttcgtgcatatgctataaggatcgcatggctccggtgtcccacaaggatcttgtggtatcctagtcgaagaatcacca |
49462873 |
T |
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| Q |
201 |
tttgatccaccaccgttgagattagagaaagtaatgacac |
240 |
Q |
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| T |
49462872 |
ttcgacccaccactgttgagattagagaaagtaataacac |
49462833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 170 - 235
Target Start/End: Original strand, 10071050 - 10071115
Alignment:
| Q |
170 |
atcttgtggtattcttgttgaggaatcaccatttgatccaccaccgttgagattagagaaagtaat |
235 |
Q |
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| T |
10071050 |
atcttgtggtattcttgttgatgaatcactgtttattccaccattgttgagagtagagaaagtaat |
10071115 |
T |
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