View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_7 (Length: 586)
Name: NF20919_low_7
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_7 |
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Alignment Details
Target: chr6 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 7 - 492
Target Start/End: Complemental strand, 7753399 - 7752912
Alignment:
| Q |
7 |
ggagcagagatgggcttctatttggtggaaggacctaattaagcttggtgattttggggagcttaattggttcaattcggggttggagcgaccagttggt |
106 |
Q |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7753399 |
ggagccgagatgggcttctatttggtggaagggcctaattaagcttggtgattttggggagcttaattggttcaattcggggttggagcgacaagttggt |
7753300 |
T |
|
| Q |
107 |
aatggtctcaactctagtttttggggtga----tggagaggagatagtagttttagaagtaggtatccgaggctctattctatttcggaccaaaaggagg |
202 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
7753299 |
aatggtctcaactctagtttttggggtgacatatggagaggagatagtagttttagaagtaggtatctgaggctctattctatttcggaccaaaaggagg |
7753200 |
T |
|
| Q |
203 |
caaaggtaggagagatgggttgggtgtcggagtttggctcggagtgaaattttacttggagaagacatcttctcatgtggaaagagggggtgcttttaag |
302 |
Q |
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| T |
7753199 |
ctaaggtaggagaggtgggttgggtgtcggagtttggctcggagtgaaattttacttggagaagacatcttttcatgtgggaagaggaggtgcttttaag |
7753100 |
T |
|
| Q |
303 |
cctcaaggaggatttggagggagctagattttctaatttagaggataaatggaggtggaagttagatgagtccggtatttttatggtgagctcggcctat |
402 |
Q |
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||| |||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
7753099 |
ccttgaggaagatttggagggagctagattgtcta----agaggataaatggaggtggaagttagatgagtccggtatttttacggtgagctcggcctat |
7753004 |
T |
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| Q |
403 |
aagaggttggagggtattgtccttagcgag--gagatggggtggagggtggaggagaaaggagttttcaagagattgtggaagagttcggcg |
492 |
Q |
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| T |
7753003 |
aagaggttggagggtattgtccttagcgaggtggggtggagccgagggtggaggagaaaggagttttcaagaggttgtggaagagttcggcg |
7752912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 275; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 7 - 548
Target Start/End: Complemental strand, 40386819 - 40386277
Alignment:
| Q |
7 |
ggagcagagatgggcttctatttggtggaaggacctaattaagcttggtgattttggggagcttaattggttcaattcggggttggagcgaccagttggt |
106 |
Q |
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||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
40386819 |
ggagccgagatgggcttctatttggtggaaggaactaactaagcttggtgattttggggagcttaattggtttaattcggggttggagcgacaagttggt |
40386720 |
T |
|
| Q |
107 |
aatggtctcaactctagtttttggggtga----tggagaggagatagtagttttagaagtaggtatccgaggctctattctatttcggaccaaaaggagg |
202 |
Q |
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| T |
40386719 |
aatggactcaactctagtttttggtgtgacaattggagaggagatagaagctttaggagtttgtatatgaggctttattctatctcggatcaaaaggagg |
40386620 |
T |
|
| Q |
203 |
caaaggtaggagagatgggttgggtgtcggagtttggctcggagtgaaattttacttggagaagacatcttctcatgtggaaagagggggtgcttttaag |
302 |
Q |
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| ||||| |||||| |||||| |||||||||||||||| ||||||| || |||| |||||| ||||||||| |||||||| |||||| |||||||||||| |
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| T |
40386619 |
ctaaggtgggagaggtgggtttggtgtcggagtttggcacggagtggaactttatttggaggagacatcttttcatgtgggaagaggaggtgcttttaag |
40386520 |
T |
|
| Q |
303 |
cctcaaggaggatttggagggagctagattttctaatttagaggataaatggaggtggaagttagatgagtccggtatttttatggtgagctcggcctat |
402 |
Q |
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||||||||||||||||| |||| || || |||||| ||||||| ||||||||||||||||| || || ||||| |||||| |||||||||||||||| |
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| T |
40386519 |
cctcaaggaggatttggttggagtaaggttgtctaatctagaggacaaatggaggtggaagttggaagattccggaattttttcggtgagctcggcctat |
40386420 |
T |
|
| Q |
403 |
aagaggttggagggtattgtccttagcgaggagatggggtggagggtggaggagaaaggagttttcaagagattgtggaagagttcggcgacatcaaaag |
502 |
Q |
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||||||||||| |||| | |||||| | ||| |||| |||||||| ||||||||||||||||||||||| ||||||||| || || || ||||| | |
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| T |
40386419 |
aagaggttggaaggtagtatcctta---atgaggtgggatggagggttgaggagaaaggagttttcaagaggttgtggaagtgtccgtcgttttcaaagg |
40386323 |
T |
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| Q |
503 |
tagtggcttttgcttggagagctattcttaatcgagttccaaccaa |
548 |
Q |
| |
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|||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
40386322 |
tagtggcttttgcttggagagccattcttaaccgagttccaaccaa |
40386277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 21 - 314
Target Start/End: Original strand, 49455987 - 49456284
Alignment:
| Q |
21 |
cttctatttggtggaaggacctaattaagcttggtgattttggggagcttaattggttcaattcggggttggagcgaccagttggtaatggtctcaactc |
120 |
Q |
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||||| ||| ||||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||| | ||||| | | || ||||| ||||| || |
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| T |
49455987 |
cttctctttcgtggaaggagctaattaagcttggtgattttggtgaacttaattggtttaattccgggcttgagcggaaaatgggcaatggcctcaattc |
49456086 |
T |
|
| Q |
121 |
tagtttttggggtga----tggagaggagatagtagttttagaagtaggtatccgaggctctattctatttcggaccaaaaggaggcaaaggtaggagag |
216 |
Q |
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|||||||||| |||| |||||||| || || || || |||||| |||||| ||||| | |||||| |||| ||||| |||||| ||| |||||| |
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| T |
49456087 |
tagtttttggagtgatacttggagaggggaaagaagcttccgaagtaagtatcctaggcttttttctatctcggcccaaatggaggcctcggttggagag |
49456186 |
T |
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| Q |
217 |
atgggttgggtgtcggagtttggctcggagtgaaattttacttggagaagacatcttctcatgtggaaagagggggtgcttttaagcctcaaggagga |
314 |
Q |
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|||| || | ||||||| || ||||||| || || |||| |||||||||| |||||||| |||||| ||||||||| ||||| |||||||| |
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| T |
49456187 |
gtgggggtggagccggagttaggtacggagtggaaattcttgtggaaaagacatcttttcatgtgggaagaggaggtgcttttgagccttaaggagga |
49456284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 258 - 417
Target Start/End: Original strand, 52075068 - 52075227
Alignment:
| Q |
258 |
ttggagaagacatcttctcatgtggaaagagggggtgcttttaagcctcaaggaggatttggagggagctagattttctaatttagaggataaatggagg |
357 |
Q |
| |
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|||||||||||||||| |||||||| ||||| ||||||| | || | ||||||||||||||||||| | || |||| || ||| | ||||| | |
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| T |
52075068 |
ttggagaagacatcttttcatgtggtaagagaaggtgcttcttagtttaaaggaggatttggagggagtgaatttgattaatcaagtggacagatggaag |
52075167 |
T |
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| Q |
358 |
tggaagttagatgagtccggtatttttatggtgagctcggcctataagaggttggagggt |
417 |
Q |
| |
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|||||| |||| || |||||||||||| |||||| ||||||||||||||||||| |||| |
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| T |
52075168 |
tggaagctagaagattccggtattttttcggtgagttcggcctataagaggttggtgggt |
52075227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 320
Target Start/End: Complemental strand, 17991108 - 17991044
Alignment:
| Q |
256 |
acttggagaagacatcttctcatgtggaaagagggggtgcttttaagcctcaaggaggatttgga |
320 |
Q |
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||||||||||| ||||| |||||||| |||||| ||||||||||||||| | |||||||||||| |
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| T |
17991108 |
acttggagaaggcatctattcatgtgggaagaggaggtgcttttaagccttagggaggatttgga |
17991044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 17991323 - 17991282
Alignment:
| Q |
45 |
ttaagcttggtgattttggggagcttaattggttcaattcgg |
86 |
Q |
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| T |
17991323 |
ttaagcttggtgattttggtgagcttaattggtttaattcgg |
17991282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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