View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_73 (Length: 232)
Name: NF20919_low_73
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_73 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 232
Target Start/End: Original strand, 28921972 - 28922196
Alignment:
| Q |
8 |
catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacatttgaaagaagaaaa |
107 |
Q |
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| T |
28921972 |
catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacatttgaaagaagaaaa |
28922071 |
T |
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| Q |
108 |
taaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttccttggtgaaggtatcaacat |
207 |
Q |
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| T |
28922072 |
taaatctttcatccacttatagacttaatcatcttactggattgttgcacagtatccccttttagtgaaacaaacagttccttggtgaaggtatcaacat |
28922171 |
T |
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| Q |
208 |
gtgataacaactgctcagcaaactc |
232 |
Q |
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| T |
28922172 |
gtgataacaactgctcagcaaactc |
28922196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 99
Target Start/End: Original strand, 28909406 - 28909497
Alignment:
| Q |
8 |
catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacatttgaaa |
99 |
Q |
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| T |
28909406 |
catcatcaaattttccaagagcattctccaagaattcaatagcaggacctgattcaaaataactaattttaaggtctattttataattgaaa |
28909497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 10 - 95
Target Start/End: Original strand, 28914052 - 28914137
Alignment:
| Q |
10 |
tcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgattcagaataaccaatttaaaggtctattttacattt |
95 |
Q |
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| T |
28914052 |
tcatcaaatttaccaagagcattctccaagaaatcagaagcaggacctgattcaaaataaccattttaaaaatctattttatattt |
28914137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 61
Target Start/End: Original strand, 40288497 - 40288550
Alignment:
| Q |
8 |
catcatcaaatttaccaagagcattctccaagaattcaaaagtaggacctgatt |
61 |
Q |
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|||||||||||||||||||||||||||||||| | ||||| | ||||||||||| |
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| T |
40288497 |
catcatcaaatttaccaagagcattctccaagtaatcaaaggcaggacctgatt |
40288550 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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