View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20919_low_74 (Length: 231)

Name: NF20919_low_74
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20919_low_74
NF20919_low_74
[»] chr3 (1 HSPs)
chr3 (1-216)||(43361463-43361688)
[»] chr7 (1 HSPs)
chr7 (112-154)||(43814455-43814497)
[»] chr8 (2 HSPs)
chr8 (125-213)||(4490323-4490409)
chr8 (126-212)||(14958005-14958091)
[»] chr1 (2 HSPs)
chr1 (125-212)||(6397739-6397824)
chr1 (44-84)||(41941005-41941045)
[»] scaffold0027 (1 HSPs)
scaffold0027 (44-85)||(43829-43870)
[»] chr6 (1 HSPs)
chr6 (128-168)||(9627252-9627292)
[»] chr5 (1 HSPs)
chr5 (126-186)||(41715034-41715093)
[»] chr2 (1 HSPs)
chr2 (126-166)||(38288563-38288603)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 43361463 - 43361688
Alignment:
Q  1 atgagttgtgacaatggtcaaaagattggttataa----------aacaacttgttgaaatatgactcatatataaaagacattaaagaaggcaaagggc 90  Q
    |||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43361463 atgagttgtgacaatggtcaaaagattggttataatgatatagcaaacaacttgttgaaatatgactcatatataaaagacattaaagaaggcaaagggc 43361562  T
Q  91 ggtaattttgcaacactaaatagtagttgtagtgctatatatattgcttctaacactgaaaccttaattctcatcacattaatacaaacgaaactaaaac 190  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  43361563 ggtaattttgcaacactaaatagtagttgtagtactatatatattgcatgtaatactgaaaccttaattctcatcacattaatacaaacgaaactaaaac 43361662  T
Q  191 tgttatatagttgcagaggtagatat 216  Q
    || | |||||||||||||||||||||    
T  43361663 tgctgtatagttgcagaggtagatat 43361688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 112 - 154
Target Start/End: Complemental strand, 43814497 - 43814455
Alignment:
Q  112 agtagttgtagtgctatatatattgcttctaacactgaaacct 154  Q
    |||||| ||||||||||||||||||||| ||||||||||||||    
T  43814497 agtagtagtagtgctatatatattgcttgtaacactgaaacct 43814455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 125 - 213
Target Start/End: Original strand, 4490323 - 4490409
Alignment:
Q  125 ctatatatattgcttctaacactgaaaccttaattctcatcacattaatacaaacgaaactaaaactgttatatagttgcagaggtaga 213  Q
    ||||||||||||| |  |||||||||||||||||  |||||| | |||||||||| | |||| ||||| | |||||| |||||||||||    
T  4490323 ctatatatattgcatgcaacactgaaaccttaat--tcatcataataatacaaacaagactataactgctctatagtcgcagaggtaga 4490409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 212
Target Start/End: Original strand, 14958005 - 14958091
Alignment:
Q  126 tatatatattgcttctaacactgaaaccttaattctcatcacattaatacaaacgaaactaaaactgttatatagttgcagaggtag 212  Q
    |||||||||||||| ||||||||||||| |||||||  ||||| ||||| ||||  ||||| | ||| | |||| | ||||||||||    
T  14958005 tatatatattgcttgtaacactgaaaccctaattcttctcacagtaatagaaacataactatagctgctctataatcgcagaggtag 14958091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 6397824 - 6397739
Alignment:
Q  125 ctatatatattgcttctaacactgaaaccttaattctcatcacattaatacaaacgaaactaaaactgttatatagttgcagaggtag 212  Q
    ||||||||||||||| |||||||||||||||| |  |||||||| ||||| |||| |||||| | ||| | ||||||  |||||||||    
T  6397824 ctatatatattgcttgtaacactgaaaccttagt--tcatcacagtaatagaaacaaaactatagctgctctatagtcacagaggtag 6397739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 41941005 - 41941045
Alignment:
Q  44 gttgaaatatgactcatatataaaagacattaaagaaggca 84  Q
    |||||| ||||||||||||||| ||||||||||||||||||    
T  41941005 gttgaagtatgactcatatatacaagacattaaagaaggca 41941045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 85
Target Start/End: Complemental strand, 43870 - 43829
Alignment:
Q  44 gttgaaatatgactcatatataaaagacattaaagaaggcaa 85  Q
    |||||||||||||||||||||| |||| ||| ||||||||||    
T  43870 gttgaaatatgactcatatatagaagatattgaagaaggcaa 43829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 9627292 - 9627252
Alignment:
Q  128 tatatattgcttctaacactgaaaccttaattctcatcaca 168  Q
    |||||||||||| ||||||||||||| ||||||| ||||||    
T  9627292 tatatattgcttgtaacactgaaaccctaattcttatcaca 9627252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 186
Target Start/End: Original strand, 41715034 - 41715093
Alignment:
Q  126 tatatatattgcttctaacactgaaaccttaattctcatcacattaatacaaacgaaacta 186  Q
    |||||||||||||| |||||||||| || | |||||||||||| ||||| ||||| |||||    
T  41715034 tatatatattgcttgtaacactgaacccct-attctcatcacagtaatagaaacggaacta 41715093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 38288603 - 38288563
Alignment:
Q  126 tatatatattgcttctaacactgaaaccttaattctcatca 166  Q
    |||||||||||||| ||||| ||||||| ||||||||||||    
T  38288603 tatatatattgcttataacattgaaaccctaattctcatca 38288563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University