View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20919_low_75 (Length: 230)
Name: NF20919_low_75
Description: NF20919
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20919_low_75 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 217
Target Start/End: Original strand, 1109116 - 1109317
Alignment:
| Q |
16 |
cataattctaagggggtatttgcccttatttgaattcaccgtgnnnnnnn-aatcttcttttatggaatgagattttgcaagggaaactttgtcccccac |
114 |
Q |
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| T |
1109116 |
cataattctaagggggtatttgcccttatttgaattcaccgtgttttttttaatcttcttttatggaatgagattttgcaagggaaactttgtcccccac |
1109215 |
T |
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| Q |
115 |
catgtaaatttacttcatggaaatgagtatgtacttattgttgttctaaaacgattatctatacattatttggagtatataaaatgatttttgtgtattt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1109216 |
-atgtaaatttacttcatggaaatgagtatgtacttattgttgttctaaaacgattatctatgcattatttggagtatataaaatgatttttgtgtattt |
1109314 |
T |
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| Q |
215 |
tat |
217 |
Q |
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||| |
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| T |
1109315 |
tat |
1109317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 111 - 215
Target Start/End: Complemental strand, 27449422 - 27449319
Alignment:
| Q |
111 |
ccaccatgtaaatttacttcatggaaatgagtatgtacttattgttgttctaaaacgattatctatacattatttggagtatataaaatgatttttgtgt |
210 |
Q |
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||||||| ||| |||||||||| ||||||||||||| |||| |||| ||||||| | |||||||| |||||||| |||||||||| |||||| |||||| |
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| T |
27449422 |
ccaccatctaaccttacttcatgaaaatgagtatgtatttatcgttggtctaaaatg-ttatctatgcattattttgagtatataatatgattgttgtgt |
27449324 |
T |
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| Q |
211 |
atttt |
215 |
Q |
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||||| |
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| T |
27449323 |
atttt |
27449319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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