View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2091_low_4 (Length: 276)
Name: NF2091_low_4
Description: NF2091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2091_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 40632776 - 40632526
Alignment:
| Q |
11 |
cacagaaaccagatatcaacgcagtataagtaacagcgtttccttccagacctttgcctttcatctagttaaaaaactcaactgcactatcgacccttcc |
110 |
Q |
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| T |
40632776 |
cacagaaaccagatatcaacgcagtataagtaacagcgtttccttccagacctttgcctttcatctcgttaaaaaactcaactgcactatcgacccttcc |
40632677 |
T |
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| Q |
111 |
aattttgcacataccatcaaccaatgcattgagcgtgaccacatctggctctacttgttcctcattcatccgactgaatagctcatgtgctttatcgaca |
210 |
Q |
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||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40632676 |
aattttgcacataccattaaccaatgcattgagtgtgaccacatctggctctacttgttcctcattcatccgactgaatagctcatgtgttttatcgaca |
40632577 |
T |
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| Q |
211 |
ttaccagctttacataaccaatcaatcaagcaattatatgtaacaatgttt |
261 |
Q |
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| T |
40632576 |
ttaccagctttacataaccaatcaatcaagcaattatatgtaacaatgttt |
40632526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 253
Target Start/End: Original strand, 41236940 - 41237182
Alignment:
| Q |
11 |
cacagaaaccagatatcaacgcagtataagtaacagcgtttccttccagacctttgcctttcatctagttaaaaaactcaactgcactatcgacccttcc |
110 |
Q |
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||||||| |||||||||||||||| || |||||||| ||||||| || || ||||||||||||| || ||||| |||||||||||| ||||||||| |
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| T |
41236940 |
cacagaaggcagatatcaacgcagtgtatgtaacagcatttcctttaaggcccttgcctttcatctcattgaaaaattcaactgcactaaagacccttcc |
41237039 |
T |
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| Q |
111 |
aattttgcacataccatcaaccaatgcattgagcgtgaccacatctggctctacttgttcctcattcatccgactgaatagctcatgtgctttatcgaca |
210 |
Q |
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| T |
41237040 |
aattttgcacatgccatcaaccaatgtattgagggtgaccacatttggctgtatttgttcctcattcatcaagccgaatagctcacgtgctttatcaatg |
41237139 |
T |
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| Q |
211 |
ttaccagctttacataaccaatcaatcaagcaattatatgtaa |
253 |
Q |
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|| |||||||| || |||| |||||||||||||||||||||| |
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| T |
41237140 |
ttgccagctttgcagaacccgtcaatcaagcaattatatgtaa |
41237182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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