View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2091_low_6 (Length: 246)
Name: NF2091_low_6
Description: NF2091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2091_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 4846263 - 4846485
Alignment:
| Q |
1 |
ctaagagactaaattagatgatgcattttttcttagggaccacagtgggtcctcactccaataatagcaagttaataagtgtttataccttctcaaatga |
100 |
Q |
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| T |
4846263 |
ctaagagactaaattagatgatgcattttttcttagggaccacagtgggtcctcactccaataatagcaagttaataagtgtttataccttctcaaatga |
4846362 |
T |
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| Q |
101 |
gcaacatattcctgcctattcatgttattcatttcttcaagttcattttggtaaatttcaatctgccaaagataataaaggaaattagactctaaggagt |
200 |
Q |
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| T |
4846363 |
gcaacatattcctgcctattcatgttattcatttcttcaagttcattttggtaaatttcaatctgccaaagataataaaggaaattagactctaaggagt |
4846462 |
T |
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| Q |
201 |
acaaatccagaaaaaatttcgct |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
4846463 |
acaaatccagaaaaaatttcgct |
4846485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 40190276 - 40190203
Alignment:
| Q |
86 |
taccttctcaaatgagcaacatattcctgcctattcatgttattcatttcttcaagttcattttggtaaatttc |
159 |
Q |
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| T |
40190276 |
taccttcttaaatgagcaacatattcctgtcttgtcatattcttcatttcctcaagttgattttgataattttc |
40190203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 143
Target Start/End: Complemental strand, 47753685 - 47753628
Alignment:
| Q |
86 |
taccttctcaaatgagcaacatattcctgcctattcatgttattcatttcttcaagtt |
143 |
Q |
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|||||||||||||| ||||||||||||||||| |||| || |||||||| ||||||| |
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| T |
47753685 |
taccttctcaaatgtgcaacatattcctgccttgtcatattcttcatttcctcaagtt |
47753628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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