View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2091_low_9 (Length: 241)
Name: NF2091_low_9
Description: NF2091
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2091_low_9 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 21 - 241
Target Start/End: Original strand, 23994508 - 23994728
Alignment:
| Q |
21 |
ctcgattcatttatggtatggataacatcatgtttctcacggttggtggaaaggaaagaactctgaaagaatatgaaagtttgggtaaacgatctggatt |
120 |
Q |
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| T |
23994508 |
ctcgattcatttatggtatggataacatcatgtttctcacggttggtggaaaggaaagaactctgaaagaatatgaaagtttgggtaaacgatctggatt |
23994607 |
T |
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| Q |
121 |
tgttaagtttcaagctgcttgtcgtgttttctccattctcgaagtgatggaactttacaaataattatggctcacatgaattgtaattttaagctcaaat |
220 |
Q |
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| T |
23994608 |
tgttaagtttcaagctgcttgtcgtgttttctccattctcgaagtgatggaactttacaaataattatggctcacatgaattgtaattttaagctcaaat |
23994707 |
T |
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| Q |
221 |
ctgtggaggattgattgatat |
241 |
Q |
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| T |
23994708 |
ctgtggaggattgattgatat |
23994728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 3297865 - 3297722
Alignment:
| Q |
41 |
gataacatcatgtttctcacggttggtggaaaggaaagaactctgaaagaatatgaaagtttgggtaaacgatctggatttgttaagtttcaagctgctt |
140 |
Q |
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| T |
3297865 |
gataacatcatgtttatcacagctggtggaaaggaaagaactccaaaagagtatgaaaatttaggtaaaaggtctggattttctaagcttcaagttgctt |
3297766 |
T |
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| Q |
141 |
gtcgtgttttctccattctcgaagtgatggaactttacaaataa |
184 |
Q |
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| T |
3297765 |
gttgtgctttctccatcatcggagtgatggaactttacaaataa |
3297722 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 3389353 - 3389210
Alignment:
| Q |
41 |
gataacatcatgtttctcacggttggtggaaaggaaagaactctgaaagaatatgaaagtttgggtaaacgatctggatttgttaagtttcaagctgctt |
140 |
Q |
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| T |
3389353 |
gataacatgatgtttatcacagctggtggtaaggaaagaacttcaaaagaatttgaaagtttgggtaaacattctggattttctaaattccaagttgttt |
3389254 |
T |
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| Q |
141 |
gtcgtgttttctccattctcgaagtgatggaactttacaaataa |
184 |
Q |
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| T |
3389253 |
gtcgtgctttctccatccttggagtgatggaactttacaaataa |
3389210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 184
Target Start/End: Complemental strand, 3369374 - 3369234
Alignment:
| Q |
44 |
aacatcatgtttctcacggttggtggaaaggaaagaactctgaaagaatatgaaagtttgggtaaacgatctggatttgttaagtttcaagctgcttgtc |
143 |
Q |
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| T |
3369374 |
aacatcatgtttatcacagctggtggtaaggaaagaactccaaaagaatatgagagtttaggtaaacaatgtggattttctaaacttcaagttgtttgtc |
3369275 |
T |
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| Q |
144 |
gtgttttctccattctcgaagtgatggaactttacaaataa |
184 |
Q |
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| T |
3369274 |
gtgctttctccatccttggagtgatggaactctacaaataa |
3369234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 187
Target Start/End: Complemental strand, 3359215 - 3359069
Alignment:
| Q |
41 |
gataacatcatgtttctcacggttggtggaaaggaaagaactctgaaagaatatgaaagtttgggtaaacgatctggatttgttaagtttcaagctgctt |
140 |
Q |
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| T |
3359215 |
gataacatgatgtttgtcacagctggtggaatggaaagaagtgtgaaggaatatgagactttgggaaaacgatctggattttctaagattcaagttgttt |
3359116 |
T |
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| Q |
141 |
gtcgtgttttctccattctcgaagtgatggaactttacaaataatta |
187 |
Q |
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| T |
3359115 |
gtcttgctttctctatcattggagtgatggaactttacaaataatta |
3359069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 41 - 184
Target Start/End: Complemental strand, 3402640 - 3402497
Alignment:
| Q |
41 |
gataacatcatgtttctcacggttggtggaaaggaaagaactctgaaagaatatgaaagtttgggtaaacgatctggatttgttaagtttcaagctgctt |
140 |
Q |
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| T |
3402640 |
gataacatgatgtttatcacagctggtggtaaggaaagaacttcaaaagaatttgagattttgggtaaacaatctggattttctaaagtcaaagttgttt |
3402541 |
T |
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| Q |
141 |
gtcgtgttttctccattctcgaagtgatggaactttacaaataa |
184 |
Q |
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| T |
3402540 |
gtcgtgctttctccatcctcggagtgatggaactttataaataa |
3402497 |
T |
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