View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20920_high_1 (Length: 1024)
Name: NF20920_high_1
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-158; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-158
Query Start/End: Original strand, 651 - 1009
Target Start/End: Complemental strand, 2411125 - 2410780
Alignment:
| Q |
651 |
catttggtctcgggtcgagaccaacctcaagcccaatttcaacctcgaaatgacgaaaagaacccttgaataccgtttcttttattctcttactaccagc |
750 |
Q |
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| T |
2411125 |
catttggtctcgggtcgagtccaacctcaagcccaatttgaac-tcgaaatgacgaaaagaacccttgaataccgtttcttttattctcttac---cagc |
2411030 |
T |
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| Q |
751 |
ctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaacttgttgttacaaacaccaaaacaaaaacaacactgtgttac |
850 |
Q |
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| T |
2411029 |
ctgtctgaatcgtaacggctagttacacgggactttaaaattcttcgaacaatctaaacttgttgttac-aacaccaaaacaaaaacaacactgtgttac |
2410931 |
T |
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| Q |
851 |
tgtaacacttttcttttgttaacaaaataatgtcagaaaatcgattcttgcctataattgaagaagaggaaatagaaattgacgacgatttctacgagaa |
950 |
Q |
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| T |
2410930 |
tgtaacgc--------tcttaacaaaataatgtcagaaaatcgattcttgcctataattgaagaagaggaaatagaaattgacgacgatttctacgagaa |
2410839 |
T |
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| Q |
951 |
gatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctgatgatg |
1009 |
Q |
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| T |
2410838 |
gatcgaagcacctaagtttgtcgacctcaccaaacctgataaacgccgtcctgatgatg |
2410780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 483 - 625
Target Start/End: Complemental strand, 2411261 - 2411123
Alignment:
| Q |
483 |
atgtatctatcatacatatacattaggggtaaaacagttttccgaagataactttcaaacccttcggctatgtatgtatatattatggataaaaacagaa |
582 |
Q |
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| T |
2411261 |
atgtatctatcatacatatacattacgggtaaaacagttttccgaagataactttcaaacccttcggctat----gtatatattatagataaaaacagaa |
2411166 |
T |
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| Q |
583 |
tttcggggtccaagagatattgagaagtgtaaaaagaaatcat |
625 |
Q |
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| T |
2411165 |
tttcggggtccaagagatattgagaagtgtaaaaagaaatcat |
2411123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 127 - 202
Target Start/End: Complemental strand, 2412824 - 2412749
Alignment:
| Q |
127 |
ataccttcttttcttcattatgctagcacattaatttcttttcattccttggccttcaaaacatgtcactaattga |
202 |
Q |
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| T |
2412824 |
ataccttcttttcttcattatgctagcacattaatttcttttcattccttggccttcaaaacatgtcactaattga |
2412749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 405 - 491
Target Start/End: Complemental strand, 2412574 - 2412488
Alignment:
| Q |
405 |
cgatcaccgctatattttgtgcctaaaaggaagataattatttcaccactctgggagataattcccgaaacttttgggatgtatcta |
491 |
Q |
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| T |
2412574 |
cgatcaccactatattttgtgcataaaaggaagataattatttcaccactctagaagataattcccgaaacttttgggatgtatcta |
2412488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 2412884 - 2412844
Alignment:
| Q |
86 |
tctcgggtcacagcccaacttcttttactatgcatgcaact |
126 |
Q |
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| T |
2412884 |
tctcgggtcacaacccaacttcttttactatgcatgtaact |
2412844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 202
Target Start/End: Complemental strand, 17943976 - 17943926
Alignment:
| Q |
152 |
gcacattaatttcttttcattccttggccttcaaaacatgtcactaattga |
202 |
Q |
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| T |
17943976 |
gcacaataatttcttctcattccttggccttataaatatgtcactaattga |
17943926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 152 - 202
Target Start/End: Original strand, 30158815 - 30158865
Alignment:
| Q |
152 |
gcacattaatttcttttcattccttggccttcaaaacatgtcactaattga |
202 |
Q |
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| T |
30158815 |
gcacaataatttcttctcattccttggccttgtaaatatgtcactaattga |
30158865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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