View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20920_high_11 (Length: 390)

Name: NF20920_high_11
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20920_high_11
NF20920_high_11
[»] chr1 (1 HSPs)
chr1 (10-374)||(50971877-50972240)
[»] chr2 (1 HSPs)
chr2 (283-374)||(9008773-9008864)
[»] chr3 (3 HSPs)
chr3 (248-324)||(500145-500221)
chr3 (327-374)||(36870914-36870961)
chr3 (49-102)||(4133355-4133408)
[»] chr8 (1 HSPs)
chr8 (303-374)||(16519559-16519630)
[»] chr7 (1 HSPs)
chr7 (49-102)||(8423708-8423761)
[»] chr4 (1 HSPs)
chr4 (52-133)||(36085803-36085884)
[»] chr5 (1 HSPs)
chr5 (88-132)||(30193802-30193846)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 10 - 374
Target Start/End: Complemental strand, 50972240 - 50971877
Alignment:
Q  10 gagtgagaagaattgattcat-aaccttgcaattgctgtagtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtttacttg 108  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  50972240 gagtgagaagaattgattcatcaaccttgcaattgctgtagtgtttggagaatgcacgtaatctgtttgatgaaatgcatgtgaggaatttgtttacttg 50972141  T
Q  109 atctcctatgactggtgcttgttcagattctactctttctaggtagaaaatttgcctcatgctttaacatctatcatcatacttattgcctgcttcatgc 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50972140 atctcctatgactggtgcttgttcagattctactctttctaggtagaaaatttgcctcatgctttaacatctatcatcatacttattgcctgcttcatgc 50972041  T
Q  209 tttaacaatattattaacactgatgccttaacagaccctatatctttggtttttcatatgtgttctggcctctatttttgacacttttatagtctaactc 308  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||    
T  50972040 tttaacaatattattaacactgatgccttaacagaccctatatctttggtttttc--atgtgttctggcctctatttttgacacttttatagtctaactc 50971943  T
Q  309 aatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatag 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50971942 aatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatag 50971877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 283 - 374
Target Start/End: Original strand, 9008773 - 9008864
Alignment:
Q  283 tttttgacacttttatagtctaactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatag 374  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| ||||| || |||||    
T  9008773 tttttaacacttttatagtctaactcaatataattgcttagatttcatgcaggacacacttcacaaccacattggcatcaatgggtatatag 9008864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 248 - 324
Target Start/End: Complemental strand, 500221 - 500145
Alignment:
Q  248 atatctttggtttttcatatgtgttctggcctctatttttgacacttttatagtctaactcaatataattgcttaaa 324  Q
    |||||||| ||||||||||||| || |||| ||||||||  ||||||||||| |||||||||||||||||| |||||    
T  500221 atatctttcgtttttcatatgttttatggcttctattttctacacttttatattctaactcaatataattgtttaaa 500145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 374
Target Start/End: Complemental strand, 36870961 - 36870914
Alignment:
Q  327 tcatgcaggacacacttcacaacctcattggcagcaatgagtctatag 374  Q
    ||||||| || ||||||||||||| |||||| ||||||||||||||||    
T  36870961 tcatgcaagaaacacttcacaaccacattggtagcaatgagtctatag 36870914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 4133355 - 4133408
Alignment:
Q  49 gtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtt 102  Q
    |||||| ||||||||| ||||  |||||||||| |||||||| |||||||||||    
T  4133355 gtgtttcgagaatgcatgtaacgtgtttgatgaaatgcatgtcaggaatttgtt 4133408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 16519630 - 16519559
Alignment:
Q  303 taactcaatataattgcttaaatttcatgcaggacacacttcacaacctcattggcagcaatgagtctatag 374  Q
    |||||||||||||||| ||||| ||||||||||| ||||||||||| | || ||| |||| |||||| ||||    
T  16519630 taactcaatataattgtttaaacttcatgcaggaaacacttcacaagcacaatggtagcagtgagtccatag 16519559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 49 - 102
Target Start/End: Original strand, 8423708 - 8423761
Alignment:
Q  49 gtgtttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtt 102  Q
    |||||| ||||||||| ||||  |||||||||| ||||||||||||||||||||    
T  8423708 gtgtttcgagaatgcatgtaaagtgtttgatgaaatgcatgtgaggaatttgtt 8423761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 36085884 - 36085803
Alignment:
Q  52 tttggagaatgcacgtaatctgtttgatgagatgcatgtgaggaatttgtttacttgatctcctatgactggtgcttgttca 133  Q
    ||||||||| |||| |||  |||||||||| |||  ||||| ||||||||||||||| ||| |||||| |||| ||||||||    
T  36085884 tttggagaaggcacataaagtgtttgatgaaatgattgtgatgaatttgtttacttggtctgctatgattggttcttgttca 36085803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 132
Target Start/End: Original strand, 30193802 - 30193846
Alignment:
Q  88 tgtgaggaatttgtttacttgatctcctatgactggtgcttgttc 132  Q
    ||||||||||||||||||||| ||| |||||| ||||| ||||||    
T  30193802 tgtgaggaatttgtttacttggtctgctatgattggtggttgttc 30193846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University