View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20920_high_17 (Length: 273)

Name: NF20920_high_17
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20920_high_17
NF20920_high_17
[»] chr3 (3 HSPs)
chr3 (13-163)||(38448203-38448353)
chr3 (207-265)||(38448353-38448411)
chr3 (56-122)||(23874330-23874396)
[»] chr1 (2 HSPs)
chr1 (143-265)||(49863617-49863740)
chr1 (23-68)||(4422897-4422942)
[»] chr6 (2 HSPs)
chr6 (37-132)||(33185613-33185708)
chr6 (29-67)||(5041761-5041799)
[»] chr4 (5 HSPs)
chr4 (24-91)||(29553594-29553661)
chr4 (24-68)||(23657637-23657681)
chr4 (22-94)||(43127442-43127514)
chr4 (29-91)||(4640538-4640600)
chr4 (26-86)||(53810065-53810125)
[»] chr7 (4 HSPs)
chr7 (24-91)||(27941348-27941415)
chr7 (24-91)||(33796221-33796288)
chr7 (26-67)||(27723961-27724002)
chr7 (22-102)||(551405-551485)
[»] chr2 (3 HSPs)
chr2 (23-93)||(22725287-22725357)
chr2 (29-67)||(41207259-41207297)
chr2 (24-92)||(15017894-15017962)
[»] chr5 (4 HSPs)
chr5 (29-94)||(27324981-27325046)
chr5 (24-92)||(11574548-11574616)
chr5 (39-99)||(18891774-18891834)
chr5 (29-73)||(24408165-24408209)


Alignment Details
Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 163
Target Start/End: Original strand, 38448203 - 38448353
Alignment:
Q  13 gaaagggcataggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcagcctacttcttccgatggg 112  Q
    ||||||||| |||||||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38448203 gaaagggcagaggagattgtgggtgtgggagaaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcagcctacttcttccgatggg 38448302  T
Q  113 tggcagtggcttttggatcccattggaggatacccacagatatctccaagc 163  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38448303 tggcagtggcttttggatcccattggaggatacccacagatatctccaagc 38448353  T

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Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 38448353 - 38448411
Alignment:
Q  207 caagaatttgcaccaagtatcatggtcatgcatttatccggttcagggcgacctttgct 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38448353 caagaatttgcaccaagtatcatggtcatgcatttatccggttcagggcgacctttgct 38448411  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 23874396 - 23874330
Alignment:
Q  56 gaggagtgtaggaaactactatctgatgtttctttgcagcctacttcttccgatgggtggcagtggc 122  Q
    ||||||||||||| | |||||  ||| |||||||||||| |||||||||| |||  |||||||||||    
T  23874396 gaggagtgtaggatattactacatgaagtttctttgcaggctacttcttcggatatgtggcagtggc 23874330  T

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Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 49863740 - 49863617
Alignment:
Q  143 tacccacagatatctccaagccaaa-aaactgttacgtaccagatatgaaactcctagcaccagacaagaatttgcaccaagtatcatggtcatgcattt 241  Q
    ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||    
T  49863740 tacccacagatatctccaagccaaacaaactgttacgtatcagatatgaaactcctagcaccggacaagaatttgcaccaagtatcatggtcatgcgttt 49863641  T
Q  242 atccggttcagggcgacctttgct 265  Q
    ||||||||||||||||||||||||    
T  49863640 atccggttcagggcgacctttgct 49863617  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 4422942 - 4422897
Alignment:
Q  23 aggagattgtgggaatgggaggaagagttgttagaggagtgtagga 68  Q
    ||||| ||||||| ||| |||||||||||||||| |||||||||||    
T  4422942 aggaggttgtgggtatgagaggaagagttgttagcggagtgtagga 4422897  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 33185708 - 33185613
Alignment:
Q  37 atgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcagcctacttcttccgatgggtggcagtggcttttggatcc 132  Q
    |||||||||||||||| ||||||||||||||||| || |   | ||||||||||||||  ||| |||   |||  |||||||||||||||||||||    
T  33185708 atgggaggaagagttggtagaggagtgtaggaaaatattgcttaatgtttctttgcaggatacatctaatgatatgtggcagtggcttttggatcc 33185613  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 5041799 - 5041761
Alignment:
Q  29 ttgtgggaatgggaggaagagttgttagaggagtgtagg 67  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  5041799 ttgtgggtgtgggaggaagagttgttagaggagtgtagg 5041761  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 29553594 - 29553661
Alignment:
Q  24 ggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttg 91  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||   |||| | |||||||||||||    
T  29553594 ggagattgtgggcgtgggaggaggagttgttagaggagtgtaggactttactgtttgatgtttctttg 29553661  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 68
Target Start/End: Complemental strand, 23657681 - 23657637
Alignment:
Q  24 ggagattgtgggaatgggaggaagagttgttagaggagtgtagga 68  Q
    ||||||||||||  |||||||| ||||||||||||||||||||||    
T  23657681 ggagattgtgggcgtgggaggaggagttgttagaggagtgtagga 23657637  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 94
Target Start/End: Original strand, 43127442 - 43127514
Alignment:
Q  22 taggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcag 94  Q
    |||||| |||||||  ||||||||||||||  ||||||||||||||  | ||||  |||||||||||||||||    
T  43127442 taggagtttgtgggtgtgggaggaagagttactagaggagtgtaggttattacttgctgatgtttctttgcag 43127514  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 91
Target Start/End: Original strand, 4640538 - 4640600
Alignment:
Q  29 ttgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttg 91  Q
    |||||||  |||||||| || |||||||||||||||||||  ||||||| |||||| ||||||    
T  4640538 ttgtgggcttgggaggaggacttgttagaggagtgtaggactctactatttgatgtctctttg 4640600  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 86
Target Start/End: Complemental strand, 53810125 - 53810065
Alignment:
Q  26 agattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgttt 86  Q
    ||||||||||  |||||||||||  ||||||||||||||||||   |||||| ||||||||    
T  53810125 agattgtgggcgtgggaggaagatatgttagaggagtgtaggacgttactatttgatgttt 53810065  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 27941348 - 27941415
Alignment:
Q  24 ggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttg 91  Q
    ||||||||||||  |||||||| ||||||||||||||||||| ||   |||| | |||||||||||||    
T  27941348 ggagattgtgggcgtgggaggaggagttgttagaggagtgtaagactttactgtttgatgtttctttg 27941415  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 33796221 - 33796288
Alignment:
Q  24 ggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttg 91  Q
    ||||| ||||||  |||||||||||| ||||||||||||||||||   |||| | |||||||||||||    
T  33796221 ggagactgtgggcgtgggaggaagagatgttagaggagtgtaggactttactgtttgatgtttctttg 33796288  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 27723961 - 27724002
Alignment:
Q  26 agattgtgggaatgggaggaagagttgttagaggagtgtagg 67  Q
    |||||||||| |||||||||||| ||||||| ||||||||||    
T  27723961 agattgtgggcatgggaggaagacttgttaggggagtgtagg 27724002  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 102
Target Start/End: Original strand, 551405 - 551485
Alignment:
Q  22 taggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcagcctacttc 102  Q
    |||||| |||||||  |||||||| ||  | |||| ||||||||||  | |||| ||||||||||||||||||||| ||||    
T  551405 taggaggttgtgggtgtgggaggaggaacttttagcggagtgtaggttattactttctgatgtttctttgcagcctccttc 551485  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 93
Target Start/End: Original strand, 22725287 - 22725357
Alignment:
Q  23 aggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgca 93  Q
    |||||||| ||||  |||||||| ||| ||||||||||||||||||   |||||| |||||||||| ||||    
T  22725287 aggagattatgggtttgggaggaggagatgttagaggagtgtaggactttactatttgatgtttctctgca 22725357  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 41207297 - 41207259
Alignment:
Q  29 ttgtgggaatgggaggaagagttgttagaggagtgtagg 67  Q
    ||||||| |||||||||||||||| ||||||||||||||    
T  41207297 ttgtgggcatgggaggaagagttggtagaggagtgtagg 41207259  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Complemental strand, 15017962 - 15017894
Alignment:
Q  24 ggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgc 92  Q
    ||||||||||||  |||||||| ||| |||||||||||||||||   || || | ||||||||||||||    
T  15017962 ggagattgtgggtgtgggaggaggagatgttagaggagtgtagggctcttctgtttgatgtttctttgc 15017894  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 27325046 - 27324981
Alignment:
Q  29 ttgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcag 94  Q
    |||||||  |||||||||| |||||||| ||||||||||| | ||||   ||||||||||||||||    
T  27325046 ttgtgggcttgggaggaagtgttgttagcggagtgtaggacattacttcttgatgtttctttgcag 27324981  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 11574548 - 11574616
Alignment:
Q  24 ggagattgtgggaatgggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgc 92  Q
    ||||||||||||  |||||||| ||| |||||||||||||||||   || || | ||||||||||||||    
T  11574548 ggagattgtgggcgtgggaggaggagatgttagaggagtgtagggctcttctgtttgatgtttctttgc 11574616  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 18891774 - 18891834
Alignment:
Q  39 gggaggaagagttgttagaggagtgtaggaaactactatctgatgtttctttgcagcctac 99  Q
    ||||||| |||  ||||| ||||||||||  |||| |||||||||||||||||||| ||||    
T  18891774 gggaggaggagaagttagtggagtgtaggttactattatctgatgtttctttgcagtctac 18891834  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 24408209 - 24408165
Alignment:
Q  29 ttgtgggaatgggaggaagagttgttagaggagtgtaggaaacta 73  Q
    |||||||  ||||||||||||||| |||||||||||||| |||||    
T  24408209 ttgtgggcttgggaggaagagttggtagaggagtgtagggaacta 24408165  T

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