View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20920_high_18 (Length: 263)
Name: NF20920_high_18
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_high_18 |
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Alignment Details
Target: chr2 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 67 - 246
Target Start/End: Original strand, 15323506 - 15323692
Alignment:
| Q |
67 |
gaagaacaatttgaaaaaacttcgtatgtcgagtataccacatgtaacataaaaataaaataaaat-------gagcatacctcatgactctcttgttgc |
159 |
Q |
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| T |
15323506 |
gaaggacaatttgaaaaaacttcgtatgtcgagtataccacatgtaacataaaaaaaaaaaaaaacaaaaaaagagcatacctcatgactctcttgttgc |
15323605 |
T |
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| Q |
160 |
atgtaggtatacaatcatgtttactatcacatgttgtctcaaggtccattcaatagtggcgatgagaggaataaaataagataaatt |
246 |
Q |
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| T |
15323606 |
atgtaggtatacaatcatgtttactatcacatgttgtctcaaggtccattcaatagtggcgatgagaggaagaaaataagataaatt |
15323692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 15323419 - 15323463
Alignment:
| Q |
13 |
aaaatgaattagtgaactgggaatagtaacacaatttgaaaaaac |
57 |
Q |
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| T |
15323419 |
aaaatgaattagtgaactgggaatagtaacacaatttgaaaaaac |
15323463 |
T |
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