View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20920_high_20 (Length: 254)

Name: NF20920_high_20
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20920_high_20
NF20920_high_20
[»] chr6 (5 HSPs)
chr6 (96-137)||(5559953-5559994)
chr6 (89-153)||(10381624-10381688)
chr6 (191-238)||(10381727-10381778)
chr6 (205-234)||(10408462-10408491)
chr6 (99-143)||(33913460-33913504)


Alignment Details
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 5559994 - 5559953
Alignment:
Q  96 ttgataacgcaagtttgtgacctaagtaaggacattaagatg 137  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  5559994 ttgataacgcaagtttgtgacctaagtaagggcattaagatg 5559953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 10381624 - 10381688
Alignment:
Q  89 gctgggtttgataacgcaagtttgtgacctaagtaaggacattaagatgctgaaaattcttttga 153  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||| ||  | |||||||||||||    
T  10381624 gctgagtttgataacgcaagtttctgacctaagtaagaacattaaaatattaaaaattcttttga 10381688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 10381727 - 10381778
Alignment:
Q  191 cacatagtgttcggtagcgcctcaaa----taagagcacctcaacatagaaa 238  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  10381727 cacatagtgttcggtagcgcctcaaataattaagagcacctcaacatagaaa 10381778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 10408491 - 10408462
Alignment:
Q  205 tagcgcctcaaataagagcacctcaacata 234  Q
    ||||||||||||||||||||||||||||||    
T  10408491 tagcgcctcaaataagagcacctcaacata 10408462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 33913504 - 33913460
Alignment:
Q  99 ataacgcaagtttgtgacctaagtaaggacattaagatgctgaaa 143  Q
    |||||| ||| ||||||||||| ||| ||||||||||||||||||    
T  33913504 ataacgtaagattgtgacctaaataaagacattaagatgctgaaa 33913460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University