View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20920_high_23 (Length: 247)
Name: NF20920_high_23
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 55977630 - 55977871
Alignment:
| Q |
1 |
ccggccataaagaaactttcaccaactac--gccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagccaccggcggcaggggc |
98 |
Q |
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| T |
55977630 |
ccggccataaagaaactttcaccaactacacgccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagccaccggcggcagggac |
55977729 |
T |
|
| Q |
99 |
gagttcaagcaatacacaactgaagccaacgttccaaatgaagttttcacttcttactccgataacgccaacggtagaactcaatccttcaactcttaca |
198 |
Q |
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||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55977730 |
gagttcaagcaatgcacaactgaagccaacgttccaaacgaagttttcacttcttactccgataacgccaacggtagaactcaatccttcaactcttaca |
55977829 |
T |
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| Q |
199 |
ccgaaaacggtaacggcggtgaccaatctttcacttcctatg |
240 |
Q |
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| T |
55977830 |
ccgaaaacggtaacggcggtgaccaatctttcacttcctatg |
55977871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 14865305 - 14865542
Alignment:
| Q |
1 |
ccggccataaagaaactttcaccaactacgccacaaacgccaacgtcgctgatcaaagctttcacacttacggcgctggagccaccggcggcaggggcga |
100 |
Q |
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|||||||||||||||| ||||||| |||||| || |||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||| | ||||| |
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| T |
14865305 |
ccggccataaagaaaccttcaccagctacgctaccaacgccaacgtcgccgatcaaagcttccacacttacggcgccggagccaccggcggcggcggcga |
14865404 |
T |
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| Q |
101 |
gttcaagcaatacacaactgaagccaacgttccaaatgaagttttcacttcttactccgataacgccaacggtagaactcaatccttcaactcttacacc |
200 |
Q |
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|||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||| |
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| T |
14865405 |
gttcaaaacatacacaactgaaaccaacgttccaaacgaagttttcacttcttactccgatagcgccaacggaagaacacaatccttcaactcttacaca |
14865504 |
T |
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| Q |
201 |
gaaaacggtaacggcggtgaccaatctttcacttccta |
238 |
Q |
| |
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|||||||||||| ||||| | ||||||||||||||||| |
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| T |
14865505 |
gaaaacggtaacagcggtcaacaatctttcacttccta |
14865542 |
T |
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