View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20920_high_24 (Length: 246)
Name: NF20920_high_24
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 31148270 - 31148054
Alignment:
| Q |
1 |
aacaaaatgtttcggatcatacatatgtgaaagtgttatataatgaaaatgatttaacctttagtatatgcttgttaaattagggaatatatannnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31148270 |
aacaaaatgtttcggatcatacatatgtgaaagtgttatataatgaaaatgatttaacctttagtatatgcttgttaaattagggaatatatatattttt |
31148171 |
T |
|
| Q |
101 |
nnaaaaatacagagaaccgaaattaattttttgtatttgattaatgctaaaaggaataatcaactaataaaaatgatagtttttctgagcaatttctgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31148170 |
ttaaaaatacagagaaccgaaattaattttttgtatttgattaatgctaaaaggaataatcaactaataaaaatgatagtttttctgagcaatttctgaa |
31148071 |
T |
|
| Q |
201 |
attgttgttaggtaatg |
217 |
Q |
| |
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||||||||||||||||| |
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| T |
31148070 |
attgttgttaggtaatg |
31148054 |
T |
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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 32995841 - 32995916
Alignment:
| Q |
107 |
atacagagaaccgaaattaattttttgtatttgattaatgctaaaaggaataatcaactaataaaaatgatagttt |
182 |
Q |
| |
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|||||||||| |||| ||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
32995841 |
atacagagaaaagaaaataattttttttatttgattaatgctaaaaggaataatgaactgataaaaatgatagttt |
32995916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 182
Target Start/End: Original strand, 54713474 - 54713549
Alignment:
| Q |
107 |
atacagagaaccgaaattaattttttgtatttgattaatgctaaaaggaataatcaactaataaaaatgatagttt |
182 |
Q |
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| T |
54713474 |
atacaaagatccgaaaataattttttttatttgattaatgctaaaaggaataatcaactgttaaaaatgaaagttt |
54713549 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 42545281 - 42545218
Alignment:
| Q |
119 |
gaaattaattttttgtatttgattaatgctaaaaggaataatcaactaataaaaatgatagttt |
182 |
Q |
| |
|
|||| ||||||||| ||||||||||||| |||||||||| || |||| |||||||||||||||| |
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|
| T |
42545281 |
gaaaataattttttttatttgattaatgttaaaaggaattatgaactgataaaaatgatagttt |
42545218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 279875 - 279938
Alignment:
| Q |
119 |
gaaattaattttttgtatttgattaatgctaaaaggaataatcaactaataaaaatgatagttt |
182 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| || |||| |||||||||||||||| |
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|
| T |
279875 |
gaaaataattttttttatttgattaatgctaaaaggaattatgaactgataaaaatgatagttt |
279938 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 7423819 - 7423882
Alignment:
| Q |
119 |
gaaattaattttttgtatttgattaatgctaaaaggaataatcaactaataaaaatgatagttt |
182 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| || ||| |||||||||||||||| |
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|
| T |
7423819 |
gaaaataattttttttatttgattaatgctaaaaggaattatgaaccgataaaaatgatagttt |
7423882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 119 - 173
Target Start/End: Complemental strand, 25877310 - 25877256
Alignment:
| Q |
119 |
gaaattaattttttgtatttgattaatgctaaaaggaataatcaactaataaaaa |
173 |
Q |
| |
|
|||| ||||||||| |||||||||||||||||||||||| || |||| ||||||| |
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|
| T |
25877310 |
gaaaataattttttttatttgattaatgctaaaaggaattatgaactgataaaaa |
25877256 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 24728127 - 24728189
Alignment:
| Q |
119 |
gaaattaattttttgtatttgattaatgctaaaaggaataatcaactaataaaaatgatagttt |
182 |
Q |
| |
|
|||| ||||||||| |||||||||| |||||||||||||||| |||| |||||||||||||||| |
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|
| T |
24728127 |
gaaaataatttttt-tatttgattattgctaaaaggaataatgaactgataaaaatgatagttt |
24728189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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