View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20920_high_27 (Length: 240)
Name: NF20920_high_27
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_high_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 55977566 - 55977355
Alignment:
| Q |
1 |
agtttttgaacgagtcgtgtccaccgggtagactcgttccgtagttggtgaaattcttatcgctgtaagccttgaaattttcatcaccttcgtgcttttc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55977566 |
agtttttgaacgagtcgtgtccaccgggtagactcgttccgtagttggtgaaattcttatcgctgtaagccttgaaattttcatcaccttcgtgcttttc |
55977467 |
T |
|
| Q |
101 |
aagactctgggctacttccgggaagcagaggatgttggcggccgagcaaaattccggcaagcgtgtggatagcatgttgcctgaagctagcttcgcaaac |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55977466 |
aagactctgggctacttccgggaggcagaggaggttggcggccgagcaaaattccggcaagcgtgtggatagcatgttgcctgaagctagcttcgcaaag |
55977367 |
T |
|
| Q |
201 |
gtcgctgcttcc |
212 |
Q |
| |
|
|||||||||||| |
|
|
| T |
55977366 |
gtcgctgcttcc |
55977355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 14865247 - 14865026
Alignment:
| Q |
1 |
agtttttgaacgagtcgtgtccaccgggtagactcgttccgtagttggtgaaattcttatcgctgtaagccttgaaattttcatcaccttcgtgcttttc |
100 |
Q |
| |
|
|||||||||||||||| |||||||||| || |||||||||||||||||| ||||| || |||||| ||||||| ||||| || |||||||||| |
|
|
| T |
14865247 |
agtttttgaacgagtcaaatccaccgggtcgatccgttccgtagttggtgaagttcttgtctctgtaaatggcgaaatttacatcatctccgtgcttttc |
14865148 |
T |
|
| Q |
101 |
aagactctgggctacttccgggaagcagaggatgttggcggccgagcaaaattccggcaagcgtgtggatagcatgttgcctgaagctagcttcgcaaac |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||| | ||| ||||| |||||||||||||||| ||| ||||||| || |||||| |||||||||||||| ||| |
|
|
| T |
14865147 |
gagactctgggctacttccggcaagcagagtaggttcgcggctgagcaaaattccggcaggcgcgtggataacacgttgccggaagctagcttcgcgaac |
14865048 |
T |
|
| Q |
201 |
gtcgctgcttccacggtagata |
222 |
Q |
| |
|
||||||||||||||||| |||| |
|
|
| T |
14865047 |
gtcgctgcttccacggtggata |
14865026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University