View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20920_high_33 (Length: 203)

Name: NF20920_high_33
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20920_high_33
NF20920_high_33
[»] chr7 (12 HSPs)
chr7 (2-193)||(48963914-48964105)
chr7 (1-101)||(22801684-22801785)
chr7 (5-104)||(25956464-25956552)
chr7 (1-54)||(35238175-35238228)
chr7 (1-88)||(24339657-24339745)
chr7 (1-48)||(1885588-1885635)
chr7 (1-104)||(44172834-44172934)
chr7 (1-37)||(5937429-5937465)
chr7 (1-49)||(31808505-31808553)
chr7 (1-50)||(27945056-27945105)
chr7 (1-37)||(2144547-2144583)
chr7 (4-44)||(10893870-10893910)
[»] chr4 (14 HSPs)
chr4 (1-104)||(37496719-37496823)
chr4 (1-102)||(13307892-13307983)
chr4 (1-83)||(847966-848049)
chr4 (1-44)||(44362681-44362724)
chr4 (4-54)||(22799884-22799934)
chr4 (1-88)||(30982834-30982922)
chr4 (1-83)||(24613662-24613745)
chr4 (65-104)||(39619053-39619092)
chr4 (3-45)||(13117446-13117488)
chr4 (1-30)||(14465309-14465338)
chr4 (1-54)||(27624083-27624136)
chr4 (1-88)||(5225569-5225657)
chr4 (1-37)||(10164862-10164898)
chr4 (12-83)||(19482694-19482766)
[»] chr5 (10 HSPs)
chr5 (1-103)||(30080442-30080545)
chr5 (12-83)||(21542056-21542128)
chr5 (3-44)||(16207592-16207633)
chr5 (1-116)||(21319873-21319989)
chr5 (6-88)||(21522770-21522853)
chr5 (6-88)||(21533336-21533419)
chr5 (1-88)||(31084338-31084420)
chr5 (1-46)||(28296343-28296388)
chr5 (1-50)||(32444781-32444830)
chr5 (1-88)||(19579716-19579804)
[»] chr6 (12 HSPs)
chr6 (8-104)||(785395-785492)
chr6 (1-49)||(19369832-19369880)
chr6 (55-104)||(26178542-26178591)
chr6 (1-45)||(6751882-6751926)
chr6 (1-88)||(16766712-16766800)
chr6 (1-39)||(10031585-10031623)
chr6 (1-48)||(6284658-6284705)
chr6 (1-69)||(4118308-4118377)
chr6 (1-49)||(9024172-9024220)
chr6 (1-37)||(10157999-10158035)
chr6 (1-49)||(22745972-22746020)
chr6 (1-88)||(31384935-31385022)
[»] chr8 (12 HSPs)
chr8 (1-104)||(27733862-27733966)
chr8 (1-83)||(22651991-22652074)
chr8 (1-70)||(21465427-21465497)
chr8 (1-88)||(29447066-29447154)
chr8 (1-37)||(31119102-31119138)
chr8 (1-37)||(42874537-42874573)
chr8 (1-83)||(2572017-2572100)
chr8 (1-102)||(10497758-10497860)
chr8 (1-89)||(26915201-26915284)
chr8 (6-54)||(5307080-5307128)
chr8 (4-36)||(22600547-22600579)
chr8 (1-49)||(31548289-31548337)
[»] chr2 (8 HSPs)
chr2 (5-97)||(24067272-24067365)
chr2 (1-102)||(43585958-43586049)
chr2 (66-110)||(8300180-8300224)
chr2 (1-88)||(37419758-37419846)
chr2 (4-37)||(13501086-13501119)
chr2 (4-37)||(16630813-16630846)
chr2 (57-118)||(17895820-17895881)
chr2 (1-37)||(14450803-14450839)
[»] chr3 (9 HSPs)
chr3 (1-88)||(4987247-4987335)
chr3 (1-49)||(15864260-15864308)
chr3 (61-104)||(34834879-34834922)
chr3 (1-50)||(44427856-44427905)
chr3 (1-88)||(14832114-14832202)
chr3 (1-50)||(11093585-11093634)
chr3 (6-39)||(13005446-13005479)
chr3 (1-50)||(19323443-19323492)
chr3 (1-46)||(49179714-49179759)
[»] scaffold0314 (1 HSPs)
scaffold0314 (1-103)||(8963-9053)
[»] scaffold0504 (2 HSPs)
scaffold0504 (66-104)||(8653-8691)
scaffold0504 (1-54)||(8688-8741)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-49)||(18104-18152)
[»] chr1 (11 HSPs)
chr1 (1-88)||(6612127-6612215)
chr1 (1-88)||(32461420-32461507)
chr1 (1-75)||(18946003-18946078)
chr1 (6-88)||(47989517-47989600)
chr1 (1-55)||(3451870-3451924)
chr1 (1-51)||(6427365-6427415)
chr1 (1-30)||(2445885-2445914)
chr1 (4-45)||(7988451-7988492)
chr1 (1-53)||(8203836-8203888)
chr1 (25-88)||(40917788-40917852)
chr1 (1-45)||(43966821-43966865)
[»] scaffold0044 (1 HSPs)
scaffold0044 (1-83)||(53195-53278)
[»] scaffold0020 (1 HSPs)
scaffold0020 (4-83)||(137798-137878)


Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 48964105 - 48963914
Alignment:
Q  2 tgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgtggacacgatacgtgtcggacaccgggacatgccttcaatcagaagtg 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  48964105 tgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtaagtgtggacacgatacgtgtcgaacaccgggacataccttcaatcagaagtg 48964006  T
Q  102 tccacgcaacaaagcctgtaaccaaaccgatcataattatttaaattacctccttatcctatatcacataaatggatggattatagtctgtg 193  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48964005 tccatgcaacaaagcctgtaaccaaaccgatcataattatttaaattacctccttatcctatatcacataaatggatggattatagtctgtg 48963914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 22801785 - 22801684
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgccttcaatcagaag 99  Q
    |||||| |||||||||||||| | ||||||||||||| |||||  |||||||||  ||||| | || |||||||||| |||||| |||||||||||||||    
T  22801785 ttgagataatgacataattcactgtaatcacaagtgtcggtgtattgtcagtgtctgacaccacacttgtcggacactgggacacgccttcaatcagaag 22801686  T
Q  100 tg 101  Q
    ||    
T  22801685 tg 22801684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 104
Target Start/End: Original strand, 25956464 - 25956552
Alignment:
Q  5 gaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgtggacacgatacgtgtcggacaccgggacatgccttcaatcagaagtgtcc 104  Q
    ||||||||||||||||||| ||||||||||||| |||||||          |||||||||| |||||||||| |||||| ||||||||||||||||||||    
T  25956464 gaaaatgacataattcaatgtaatcacaagtgtcggtgtcg----------gacacgatacatgtcggacac-gggacacgccttcaatcagaagtgtcc 25956552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35238228 - 35238175
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt 54  Q
    ||||||||||||||||||||||| |||||||| ||||| |||||||||| ||||    
T  35238228 ttgagaaaatgacataattcaatataatcacacgtgttagtgtcgtgtctgtgt 35238175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 24339657 - 24339745
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||| ||||| |||||||||| | |||| |||||||| ||||||||||| |||| |||||||| |||| || |||||||||||| ||||    
T  24339657 ttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtatccgacaccgggacacgcct 24339745  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 1885588 - 1885635
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgt 48  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||||||    
T  1885588 ttgaaaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgt 1885635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 44172934 - 44172834
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgtggacac-gatacgtgtcggacaccgggacatgccttcaatcagaag 99  Q
    ||||||||||||||||||||||| |||||||| ||||| |||| ||||  ||||   ||| || |||||||||||| || |||||  |||||||||||||    
T  44172934 ttgagaaaatgacataattcaatgtaatcacatgtgtttgtgttgtgttggtgt---cactgacacgtgtcggaca-cgtgacataacttcaatcagaag 44172839  T
Q  100 tgtcc 104  Q
    |||||    
T  44172838 tgtcc 44172834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5937465 - 5937429
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgt 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  5937465 ttgagaaaatgacataattcaatgtaatcacaagtgt 5937429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31808553 - 31808505
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtc 49  Q
    |||||||||||||| || ||||| |||||||| ||||||||||||||||    
T  31808553 ttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcgtgtc 31808505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 27945056 - 27945105
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtca 50  Q
    |||||||||| |||||||||| | |||| |||||||| ||||||||||||    
T  27945056 ttgagaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtca 27945105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2144583 - 2144547
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgt 37  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  2144583 ttgagaaaatgacataattcaatgtaatcacacgtgt 2144547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 10893910 - 10893870
Alignment:
Q  4 agaaaatgacataattcaatttaatcacaagtgttggtgtc 44  Q
    |||||||||||||||| ||| |||||||| |||||||||||    
T  10893910 agaaaatgacataattgaatgtaatcacatgtgttggtgtc 10893870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37496719 - 37496823
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtg-tggacacgatacgtgtcggacaccgggacatgccttcaatcagaag 99  Q
    ||||||||||||||||||||||| ||||||||||||| ||||| |||||  ||  |||||||| || ||||||||||||||||| ||||||||||| |||    
T  37496719 ttgagaaaatgacataattcaatgtaatcacaagtgtcggtgttgtgtcgttgccggacacgacacatgtcggacaccgggacacgccttcaatcataag 37496818  T
Q  100 tgtcc 104  Q
    |||||    
T  37496819 tgtcc 37496823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 13307892 - 13307983
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgtggacacgatacgtgtcggacaccgggacatgccttcaatcagaagt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||          |||||||| ||||||| ||||||  |||||||||||||||||||||    
T  13307892 ttgagaaaatgacataattcaatgtaatcacaagtgttggtgtc----------ggacacgacacgtgtcagacaccatgacatgccttcaatcagaagt 13307981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 847966 - 848049
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggaca 83  Q
    |||||||||| |||||||||| | |||| |||||||| |||||| |||  |||| |||||||| |||||||| |||||||||||    
T  847966 ttgagaaaattacataattcactataattacaagtgtcggtgtcttgttggtgtcggacacgaaacgtgtcgaacaccgggaca 848049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 44362681 - 44362724
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtc 44  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||    
T  44362681 ttgagaaaatgacataatttaatgtaatcacaagtgttggtgtc 44362724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 4 - 54
Target Start/End: Complemental strand, 22799934 - 22799884
Alignment:
Q  4 agaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt 54  Q
    |||||||||||||||||||| |||||||| ||||  |||||||||||||||    
T  22799934 agaaaatgacataattcaatgtaatcacacgtgtcagtgtcgtgtcagtgt 22799884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 30982922 - 30982834
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||||||||| ||||| |||| | |||| | |||||| ||||||||||| ||||  ||||||| ||||||| |||||||||||| ||||    
T  30982922 ttgagaaaatcacatatttcagtgtaattataagtgtcggtgtcgtgtcggtgtcagacacgacacgtgtccgacaccgggacacgcct 30982834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 24613745 - 24613662
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggaca 83  Q
    |||||||||| |||||||||||| |||  |||||||| |||||| |||| ||||  ||||||| ||||||| |||||| |||||    
T  24613745 ttgagaaaatcacataattcaatgtaagtacaagtgtcggtgtcatgtcggtgtcagacacgacacgtgtctgacaccaggaca 24613662  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 39619092 - 39619053
Alignment:
Q  65 cgtgtcggacaccgggacatgccttcaatcagaagtgtcc 104  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  39619092 cgtgtcggacaccgggacacaccttcaatcagaagtgtcc 39619053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 13117446 - 13117488
Alignment:
Q  3 gagaaaatgacataattcaatttaatcacaagtgttggtgtcg 45  Q
    |||||||||||| |||||||| ||||||||||||| |||||||    
T  13117446 gagaaaatgacaaaattcaatgtaatcacaagtgtcggtgtcg 13117488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 14465338 - 14465309
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatca 30  Q
    ||||||||||||||||||||||||||||||    
T  14465338 ttgagaaaatgacataattcaatttaatca 14465309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 27624136 - 27624083
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt 54  Q
    |||| |||| || |||||||||| |||||||| |||| ||||||||||||||||    
T  27624136 ttgataaaaggatataattcaatctaatcacatgtgtcggtgtcgtgtcagtgt 27624083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 5225657 - 5225569
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||||| ||||||||||||||||  ||| | | |||| ||||||||||  |||| ||||||||||| | |||||| |||||||| ||||    
T  5225657 ttgagataatgacataattcaatgcaataatatgtgtcggtgtcgtgttggtgtcggacacgatacatatcggaccccgggacacgcct 5225569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10164898 - 10164862
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgt 37  Q
    |||| |||||||||||||||||| |||||||||||||    
T  10164898 ttgaaaaaatgacataattcaatgtaatcacaagtgt 10164862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 19482694 - 19482766
Alignment:
Q  12 acataattcaatttaatcacaagtgttggtgtcgtgtcagt-gtggacacgatacgtgtcggacaccgggaca 83  Q
    |||||||||  | |||| |||||||||||||||||||| ||  ||||||||| ||||||| ||||| ||||||    
T  19482694 acataattcggtgtaattacaagtgttggtgtcgtgtcggtattggacacgacacgtgtccgacactgggaca 19482766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 5e-21; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 30080545 - 30080442
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgccttcaatcagaag 99  Q
    ||||||||||||||||||||||| ||||||||||| | ||||| |||| ||||| ||||| || || |||||||||||||||||  |||||||| |||||    
T  30080545 ttgagaaaatgacataattcaatgtaatcacaagtatcggtgtggtgttagtgtcggacatgacacatgtcggacaccgggacactccttcaattagaag 30080446  T
Q  100 tgtc 103  Q
    ||||    
T  30080445 tgtc 30080442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 21542056 - 21542128
Alignment:
Q  12 acataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggaca 83  Q
    |||||||||| | |||| |||||||| ||||||||||| |||| |||||||| ||||||| ||||||||||||    
T  21542056 acataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacgtgtccgacaccgggaca 21542128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Complemental strand, 16207633 - 16207592
Alignment:
Q  3 gagaaaatgacataattcaatttaatcacaagtgttggtgtc 44  Q
    |||||| |||||||||||||| ||||||||||||||||||||    
T  16207633 gagaaattgacataattcaatgtaatcacaagtgttggtgtc 16207592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 21319989 - 21319873
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgccttcaatcagaag 99  Q
    |||| ||||||| |||||||||| ||||||||||||| | |||| |||| |||| |||||||||   | ||| ||||| ||| |  ||||||||||||||    
T  21319989 ttgaaaaaatgatataattcaatgtaatcacaagtgtcgatgtcatgtcggtgtcggacacgatgtatatcgaacaccaggatagaccttcaatcagaag 21319890  T
Q  100 tgtccacgcaacaaagc 116  Q
    ||| |  ||||||||||    
T  21319889 tgttcgtgcaacaaagc 21319873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 21522770 - 21522853
Alignment:
Q  6 aaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    ||||| |||||||||| | |||| |||| ||| ||||||||||| |||| |||||||| ||||||| | |||||||||| ||||    
T  21522770 aaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcct 21522853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 21533336 - 21533419
Alignment:
Q  6 aaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    ||||| |||||||||| | |||| |||| ||| ||||||||||| |||| |||||||| ||||||| | |||||||||| ||||    
T  21533336 aaaataacataattcagtgtaattacaattgtcggtgtcgtgtcggtgtcggacacgacacgtgtccggcaccgggacacgcct 21533419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 31084338 - 31084420
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgtggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||| ||||| |||||||||||| |||| |||||||| | |||||||||     |||||||| ||||||| ||||| |||||||||||    
T  31084338 ttgaaaaaatcacataattcaatgtaattacaagtgtcgatgtcgtgtc-----ggacacgacacgtgtccgacactgggacatgcct 31084420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 28296343 - 28296388
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgt 46  Q
    ||||||||||||||||||||||| || ||| | |||||||||||||    
T  28296343 ttgagaaaatgacataattcaatgtactcatatgtgttggtgtcgt 28296388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 32444781 - 32444830
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtca 50  Q
    ||||||| ||||||||||||||| |||||| | |||| ||||||||||||    
T  32444781 ttgagaagatgacataattcaatgtaatcaaatgtgtcggtgtcgtgtca 32444830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 19579716 - 19579804
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||||||||| |||||||| | |  ||| |||||||| |||||||||||||||| |||||||| |  ||||  ||||||||||| ||||    
T  19579716 ttgagaaaatcacataatttagtgcaattacaagtgtcggtgtcgtgtcagtgtcggacacgacatatgtctaacaccgggacacgcct 19579804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 785492 - 785395
Alignment:
Q  8 aatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgccttcaatcagaagtgtcc 104  Q
    |||||||||||||||| ||||||||||||| ||||||||||| |||| | ||| |||  |||||||||||| |||||  |||||||||||||||||||    
T  785492 aatgacataattcaatgtaatcacaagtgtcggtgtcgtgtcggtgtcgaacatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtcc 785395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 19369832 - 19369880
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtc 49  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||||||    
T  19369832 ttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcgtgtc 19369880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 26178542 - 26178591
Alignment:
Q  55 ggacacgatacgtgtcggacaccgggacatgccttcaatcagaagtgtcc 104  Q
    |||||||| |||||||||||| |||||||| |||||||||||||||||||    
T  26178542 ggacacgacacgtgtcggacatcgggacataccttcaatcagaagtgtcc 26178591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 6751926 - 6751882
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcg 45  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||    
T  6751926 ttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtcg 6751882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 16766712 - 16766800
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||| ||||| |||||||||| | |||| |||||||| ||||||||||| |||| |||||| | ||||||| |||||||||||| ||||    
T  16766712 ttgaaaaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacaacacgtgtccgacaccgggacacgcct 16766800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 10031585 - 10031623
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttg 39  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  10031585 ttgagaaaatgacataattcaatgtaatcacaagtgttg 10031623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 6284705 - 6284658
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgt 48  Q
    ||||||||||||||||||| |||||||||||| ||||| |||| ||||    
T  6284705 ttgagaaaatgacataattgaatttaatcacatgtgttagtgtagtgt 6284658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 4118377 - 4118308
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgt 69  Q
    |||| ||||| |||||||| ||| |||| |||||||||||| | |||||||||| |||||| ||||||||    
T  4118377 ttgaaaaaatcacataattaaatgtaattacaagtgttggttttgtgtcagtgtcggacacaatacgtgt 4118308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 9024220 - 9024172
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtc 49  Q
    ||||||||||||||||||||||| |||||| | ||||  ||||||||||    
T  9024220 ttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtc 9024172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10157999 - 10158035
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgt 37  Q
    ||||||||||||||||||||||| |||||||| ||||    
T  10157999 ttgagaaaatgacataattcaatgtaatcacatgtgt 10158035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 22745972 - 22746020
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtc 49  Q
    |||||||||||  ||| |||||| ||||||||||||| |||||||||||    
T  22745972 ttgagaaaatgttatatttcaatgtaatcacaagtgtcggtgtcgtgtc 22746020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 31384935 - 31385022
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||| ||||| |||||||||| | |||| ||||||||  ||||||||| ||||| |||||||| |||||||  ||||||||||| ||||    
T  31384935 ttgaaaaaatcacataattcagtgtaattacaagtgtcagtgtcgtgt-agtgttggacacgacacgtgtcctacaccgggacacgcct 31385022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 8e-17; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 27733862 - 27733966
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcag-tgtggacacgatacgtgtcggacaccgggacatgccttcaatcagaag 99  Q
    |||||||||||| |||||||||| |||||||||||||||||||| |||| |     ||||| |||| ||||||||||| | ||| |||||||||||||||    
T  27733862 ttgagaaaatgatataattcaatgtaatcacaagtgttggtgtcatgtcggacaccgacacaatacttgtcggacacccgaacacgccttcaatcagaag 27733961  T
Q  100 tgtcc 104  Q
    |||||    
T  27733962 tgtcc 27733966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 22651991 - 22652074
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggaca 83  Q
    |||| ||||| |||||||||||| |||| |||||||| ||||||||||| |||| |||||||| | ||||| ||||||||||||    
T  22651991 ttgaaaaaatcacataattcaatataattacaagtgtcggtgtcgtgtcggtgtcggacacgacatgtgtccgacaccgggaca 22652074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 21465427 - 21465497
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtc 70  Q
    |||| ||||| | ||||||| || |||| ||||||||||||||||||||||||| |||||||| |||||||    
T  21465427 ttgaaaaaatcatataattcgatgtaattacaagtgttggtgtcgtgtcagtgtcggacacgacacgtgtc 21465497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 29447154 - 29447066
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||||||||| |||||||||||| |||  |||||||| |||||| |||| |||| |||||||| | ||||| |||||| ||||| ||||    
T  29447154 ttgagaaaatcacataattcaatgtaactacaagtgtcggtgtcatgtcggtgtcggacacgacatgtgtctgacaccaggacacgcct 29447066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31119102 - 31119138
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgt 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  31119102 ttgagaaaatgacataattcaatgtaatcacaagtgt 31119138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42874537 - 42874573
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgt 37  Q
    ||||||||||||||||||||||| |||||||||||||    
T  42874537 ttgagaaaatgacataattcaatgtaatcacaagtgt 42874573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 2572100 - 2572017
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggaca 83  Q
    |||| ||||| |||||||| | | |||| |||||||| ||||||||||| |||| |||||||| ||||||| || |||||||||    
T  2572100 ttgaaaaaatcacataatttagtgtaattacaagtgtcggtgtcgtgtctgtgtcggacacgacacgtgtccgataccgggaca 2572017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 10497860 - 10497758
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgtgga-cacgatacgtgtcggacaccgggacatgccttcaatcagaag 99  Q
    |||||||||| ||||||||  || |||||||||||||  || ||||||| |||| || ||  |||| ||||  ||||||||||| ||||||||||||| |    
T  10497860 ttgagaaaataacataatttgatgtaatcacaagtgtcagtatcgtgtcggtgtcgaacataatacatgtcaaacaccgggacacgccttcaatcagagg 10497761  T
Q  100 tgt 102  Q
    |||    
T  10497760 tgt 10497758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 26915284 - 26915201
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcctt 89  Q
    ||||||||||||||||||| ||| |||||||||      |||||||||| |||| |||||||||||||||| ||||  |||||| |||||    
T  26915284 ttgagaaaatgacataatttaatgtaatcacaa------gtgtcgtgtcggtgtcggacacgatacgtgtcagacattgggacacgcctt 26915201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 5307080 - 5307128
Alignment:
Q  6 aaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt 54  Q
    ||||||||||||||||||  ||||| |||||| ||||||||||| ||||    
T  5307080 aaaatgacataattcaatgaaatcataagtgtcggtgtcgtgtccgtgt 5307128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 22600547 - 22600579
Alignment:
Q  4 agaaaatgacataattcaatttaatcacaagtg 36  Q
    |||||||||||||||||||| ||||||||||||    
T  22600547 agaaaatgacataattcaatataatcacaagtg 22600579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 31548337 - 31548289
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtc 49  Q
    |||| |||||||||||||||||| |||||||| |||| |||||| ||||    
T  31548337 ttgataaaatgacataattcaatgtaatcacatgtgtcggtgtcatgtc 31548289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 5 - 97
Target Start/End: Original strand, 24067272 - 24067365
Alignment:
Q  5 gaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgccttcaatcaga 97  Q
    ||||||||||||||||||| ||||||||||||||||| || |||| |||| |||||| | ||||| || ||||   ||||||||||||||||||    
T  24067272 gaaaatgacataattcaatgtaatcacaagtgttggtttcatgtcggtgtcggacacaacacgtgccgaacactaagacatgccttcaatcaga 24067365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 43586049 - 43585958
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgtggacacgatacgtgtcggacaccgggacatgccttcaatcagaagt 100  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||          |||||||||||||||| |||||  |||||  |||||||||||||||    
T  43586049 ttgagaaaatgacataattcaatgtaatcacaagtgtcggtgtc----------ggacacgatacgtgtcagacacatggacacaccttcaatcagaagt 43585960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 8300224 - 8300180
Alignment:
Q  66 gtgtcggacaccgggacatgccttcaatcagaagtgtccacgcaa 110  Q
    |||| ||||||||||||| ||||||||||||||||||||| ||||    
T  8300224 gtgttggacaccgggacacgccttcaatcagaagtgtccatgcaa 8300180  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 37419758 - 37419846
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||| ||||| ||| |||||| | |||| |||||||  ||||||||||| |||| ||||||||| |||||| |||||||||||| ||||    
T  37419758 ttgaaaaaatcacaaaattcagtgtaattacaagtgccggtgtcgtgtcggtgtcggacacgatgcgtgtccgacaccgggacacgcct 37419846  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 13501119 - 13501086
Alignment:
Q  4 agaaaatgacataattcaatttaatcacaagtgt 37  Q
    |||||||||||||||||||| |||||||||||||    
T  13501119 agaaaatgacataattcaatgtaatcacaagtgt 13501086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 16630813 - 16630846
Alignment:
Q  4 agaaaatgacataattcaatttaatcacaagtgt 37  Q
    ||||||||||||||||||||||||||||| ||||    
T  16630813 agaaaatgacataattcaatttaatcacatgtgt 16630846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 17895881 - 17895820
Alignment:
Q  57 acacgatacgtgtcggacaccgggacatgccttcaatcagaagtgtccacgcaacaaagcct 118  Q
    ||||||||||||||||| |   ||||| ||||||||||| ||||||||| |||||| |||||    
T  17895881 acacgatacgtgtcggatattaggacacgccttcaatcaaaagtgtccatgcaacagagcct 17895820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14450839 - 14450803
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgt 37  Q
    |||||||||| |||||||||||| |||||||||||||    
T  14450839 ttgagaaaatcacataattcaatgtaatcacaagtgt 14450803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 4987335 - 4987247
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtg-tggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||| ||||| |||||||||| | |||| ||||||||||||| |||||| ||| ||||||||| ||||||| |||||||||||| ||||    
T  4987335 ttgaaaaaatcacataattcagtgtaattacaagtgttggtgacgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcct 4987247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 15864260 - 15864308
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtc 49  Q
    ||||||||||||||||||||||| ||||||  |||||||||||||||||    
T  15864260 ttgagaaaatgacataattcaatataatcattagtgttggtgtcgtgtc 15864308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 104
Target Start/End: Complemental strand, 34834922 - 34834879
Alignment:
Q  61 gatacgtgtcggacaccgggacatgccttcaatcagaagtgtcc 104  Q
    ||||| ||||||||||||||||| ||||||||||||||||||||    
T  34834922 gatacatgtcggacaccgggacacgccttcaatcagaagtgtcc 34834879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 44427856 - 44427905
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtca 50  Q
    |||||||||||||||||| |||| |||||||| |||| ||||||||||||    
T  44427856 ttgagaaaatgacataatccaatgtaatcacatgtgtcggtgtcgtgtca 44427905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 14832114 - 14832202
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||| ||||| |||||| ||||| |||| ||||||||  |||||||||| || | |||||||| ||||||| |||||||||||| ||||    
T  14832114 ttgaaaaaatcacataactcaatgtaattacaagtgtcagtgtcgtgtcggtatcggacacgacacgtgtccgacaccgggacacgcct 14832202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11093585 - 11093634
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtca 50  Q
    |||| |||||||||||||||||  |||||| | |||||||||||||||||    
T  11093585 ttgaaaaaatgacataattcaaagtaatcagatgtgttggtgtcgtgtca 11093634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 6 - 39
Target Start/End: Original strand, 13005446 - 13005479
Alignment:
Q  6 aaaatgacataattcaatttaatcacaagtgttg 39  Q
    |||||||||||||||||| |||||||||||||||    
T  13005446 aaaatgacataattcaatataatcacaagtgttg 13005479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 19323492 - 19323443
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtca 50  Q
    ||||||||||||||||||| |||||||||||| ||||  |||||| ||||    
T  19323492 ttgagaaaatgacataattgaatttaatcacatgtgtaagtgtcgcgtca 19323443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 49179759 - 49179714
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgt 46  Q
    |||||||| ||||||||||| || ||||||||||||| ||||||||    
T  49179759 ttgagaaagtgacataattcgatgtaatcacaagtgtcggtgtcgt 49179714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 8963 - 9053
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgtggacacgatacgtgtcggacaccgggacatgccttcaatcagaagt 100  Q
    ||||||||||||||||||||||  ||||||||||||| |||||| |||| |||||           ||||||||||||||||| ||||||||||||||||    
T  8963 ttgagaaaatgacataattcaacgtaatcacaagtgtcggtgtcatgtc-gtgtg-----------tgtcggacaccgggacacgccttcaatcagaagt 9050  T

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Target: scaffold0504 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 8691 - 8653
Alignment:
Q  66 gtgtcggacaccgggacatgccttcaatcagaagtgtcc 104  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  8691 gtgtcagacaccgggacatgccttcaatcagaagtgtcc 8653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 8741 - 8688
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt 54  Q
    ||||||||||||||| ||||||| ||| ||||||||| | ||||||||||||||    
T  8741 ttgagaaaatgacatgattcaatgtaaccacaagtgtggttgtcgtgtcagtgt 8688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 18152 - 18104
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtc 49  Q
    |||||||||| |||||||||||| ||||| ||||||||||||| |||||    
T  18152 ttgagaaaataacataattcaatgtaatcgcaagtgttggtgttgtgtc 18104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 6612215 - 6612127
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||| ||||| |||||||||| | |||| |||||||| |||||||||||  ||| |||||||||| ||||| |||||| ||||| ||||    
T  6612215 ttgaaaaaattacataattcagtgtaattacaagtgtcggtgtcgtgtcgatgtcggacacgatatgtgtccgacaccaggacacgcct 6612127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 32461507 - 32461420
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||| ||||| |||||||| ||| |||| |||||||||||||| ||||| |||| |||||||| ||||||| ||||| |||||| ||||    
T  32461507 ttgaaaaaatcacataatttaatgtaattacaagtgttggtgt-gtgtcggtgtcggacacgacacgtgtctgacactgggacacgcct 32461420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 18946078 - 18946003
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggaca 75  Q
    ||||||||||||||||||||||| ||||||| |||||  ||||  |||| ||||  ||||||| ||||||||||||    
T  18946078 ttgagaaaatgacataattcaatgtaatcacgagtgtgagtgtattgtcggtgtctgacacgacacgtgtcggaca 18946003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 47989517 - 47989600
Alignment:
Q  6 aaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    ||||| |||||||||| | |||| |||||||| ||||||||||| |||| |||||||| || |||| |||| ||||||| ||||    
T  47989517 aaaatcacataattcagtgtaattacaagtgtcggtgtcgtgtcggtgtcggacacgacacatgtctgacatcgggacacgcct 47989600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 3451870 - 3451924
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgtg 55  Q
    ||||||||| ||  ||||| |||||||||||| |||||||||||||||| |||||    
T  3451870 ttgagaaaacgaattaattgaatttaatcacatgtgttggtgtcgtgtcggtgtg 3451924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6427365 - 6427415
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcag 51  Q
    |||||||||| |||||||||||| |||| | | ||||||||||||||||||    
T  6427365 ttgagaaaatcacataattcaatgtaattatatgtgttggtgtcgtgtcag 6427415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 2445885 - 2445914
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatca 30  Q
    ||||||||||||||||||||||||||||||    
T  2445885 ttgagaaaatgacataattcaatttaatca 2445914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 7988492 - 7988451
Alignment:
Q  4 agaaaatgacataattcaatttaatcacaagtgttggtgtcg 45  Q
    ||||| |||||||||||||| |||||| ||||||||||||||    
T  7988492 agaaagtgacataattcaatgtaatcataagtgttggtgtcg 7988451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8203836 - 8203888
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtg 53  Q
    ||||||||||||||||| | ||| |||||||||||||| || || ||||||||    
T  8203836 ttgagaaaatgacataagtgaatgtaatcacaagtgttagtctcatgtcagtg 8203888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 40917788 - 40917852
Alignment:
Q  25 taatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggacatgcct 88  Q
    |||| |||||| | ||||||||||| |||| |||||||| ||||||| |||||||||||| ||||    
T  40917788 taattacaagtctcggtgtcgtgtcggtgttggacacgacacgtgtccgacaccgggacacgcct 40917852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 43966821 - 43966865
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcg 45  Q
    |||||||||||| | |||||||| |||||||| ||||||||||||    
T  43966821 ttgagaaaatgatacaattcaatgtaatcacatgtgttggtgtcg 43966865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 53195 - 53278
Alignment:
Q  1 ttgagaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggaca 83  Q
    |||||||||| |||||||||| | |||| | |||||| |||| |||||| |||| ||||| || ||||||| ||||||||||||    
T  53195 ttgagaaaatcacataattcagtgtaattataagtgtcggtgccgtgtcggtgtcggacatgacacgtgtccgacaccgggaca 53278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 137798 - 137878
Alignment:
Q  4 agaaaatgacataattcaatttaatcacaagtgttggtgtcgtgtcagtgt-ggacacgatacgtgtcggacaccgggaca 83  Q
    ||||||| ||| |||||| | || ||| | ||||||||||||||||||||| ||||||| ||| |||| ||||||| ||||    
T  137798 agaaaatcacacaattcagtgtagtcatatgtgttggtgtcgtgtcagtgtcggacacggtacatgtccgacaccgagaca 137878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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