View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20920_high_7 (Length: 426)
Name: NF20920_high_7
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Complemental strand, 38633453 - 38633049
Alignment:
| Q |
17 |
atgaagcacatacacgacacaaaacacgacgtcgacatgaaaacgaggagtgtctttgtttcataggttaatagttaatacagttattaatccacccaat |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38633453 |
atgaagcacagacacgacacaaaacacgacatcaacatgaaaacgaggagtgtctttgtttcataggttaatagttaatacagttattaatccacccaat |
38633354 |
T |
|
| Q |
117 |
atgtcttcactaatttaattaactcttaagtaaacagttatctacaactttaattatgaatactaaatatgtgaatcaccaaagagcacttgaatgagat |
216 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38633353 |
atgtcttcactaattta-ttaactcttaagtaaacagttatctacaactttaattatgaatactaaatatgtgaatcaccaaagagcacttgaatgagat |
38633255 |
T |
|
| Q |
217 |
gcttaaggtccaaggtttgaatagaaccctgaaaatgcagcgcaatagtgctaaatctcttgtggaaagtggttctatctgactcgagagatttaatatg |
316 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38633254 |
gcttaaggtccaaggttcgaatagaaccctgaaaatgcagcgcaatagtgctaaatctcttgtggaaagtggttctatctgactcgagagatttaatatg |
38633155 |
T |
|
| Q |
317 |
cgcagttgtgcatagaggatatccgattcac------nnnnnnnnnntacaatcacactcggtacttttcagtttatgttctgttactcattttctggtt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38633154 |
tgcagttgtgcatagaggatatccgattcacaaaaaaaaaaaaaaaatacaatcacactcggtacttttcagtttatgttctgttactcattttctggtt |
38633055 |
T |
|
| Q |
411 |
cctttg |
416 |
Q |
| |
|
|||||| |
|
|
| T |
38633054 |
cctttg |
38633049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 168
Target Start/End: Complemental strand, 35203054 - 35202996
Alignment:
| Q |
109 |
cacccaatatgtcttcactaatttaattaactcttaagtaaacagttatctacaacttta |
168 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||| | ||||||||| |||| ||||| |
|
|
| T |
35203054 |
cacccaatatgtcttcattaacttaattaactcttaa-ttaacagttatatacaccttta |
35202996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University