View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20920_low_10 (Length: 392)
Name: NF20920_low_10
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 161; Significance: 9e-86; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 177 - 365
Target Start/End: Complemental strand, 1522202 - 1522017
Alignment:
| Q |
177 |
ccaaggtggctgatttaaagaaaacccttcgtgattggaaaagatttaggaggttaggggttaattctactgtaaatgtctattggaacactcacgagtg |
276 |
Q |
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| T |
1522202 |
ccaaggtggctgatttaaagaaaacccttcgtgattggaaaagatttaggaggttaggggttaattctactgtaaatgtctattggaacactcacgagtg |
1522103 |
T |
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| Q |
277 |
gtgtttagagtcttgggataatgacctaatataataatggatt-ttttggaggtaatatatataacaatggtttagtcatcactcatcac |
365 |
Q |
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| T |
1522102 |
gtgtttagagtcttgggataatgacctaatataataatggatttttttagaggta----atataacaatggtttagtcatcactcatcac |
1522017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 2 - 165
Target Start/End: Original strand, 1522302 - 1522465
Alignment:
| Q |
2 |
ttgcctggattcccaaatctcgaaatataccacctttaatgaggtcctcaagcgcatcttgctccnnnnnnnctgtgaaattatctttcattccatatca |
101 |
Q |
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| T |
1522302 |
ttgccttgattcccaaatctcgaaatataccacctttaatgaggtcctcaagcacatcttgctcctttttttctgtgaaattatctttcattccatacca |
1522401 |
T |
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| Q |
102 |
tgactcaaacaaagatatggtattgttgtttgatctcacaaagaaaaatccagtattgactcga |
165 |
Q |
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| T |
1522402 |
tgtctcaaacaaagatatggtcttgttgtttgatctcacaaagaaaaatccagtattgactcga |
1522465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 1512758 - 1512894
Alignment:
| Q |
24 |
aaatataccacctttaatgaggtcctcaagcgcatcttgctccnnnnnnnctgtgaaattatctttcattccatatcatgactcaaacaaagatatggta |
123 |
Q |
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| T |
1512758 |
aaatataccagcttcaatgaggtcaataagcacatcttgctcctttttacctgtggaattgtctttctttccataccatgtttcaaacaaggatatggtc |
1512857 |
T |
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| Q |
124 |
ttgttgtttgatctcacaaagaaaaatccagtattga |
160 |
Q |
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| T |
1512858 |
tttttatttgacctcacaaagaaaaatccagtattga |
1512894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 1517949 - 1518095
Alignment:
| Q |
12 |
tcccaaatctcgaaatataccacctttaatgaggtcctcaagcgcatcttgctccnnnnnnnctgtgaaattatctttcattccatatcatgactcaaac |
111 |
Q |
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| T |
1517949 |
tcccaaatgtccaattataccacctccaatgaggtcaagaagcacatcttgctccttttttcctgtggaattatctttcattccattccatatttcaaac |
1518048 |
T |
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| Q |
112 |
aaagatatggtattgttgtttgatctcacaaagaaaaatccagtatt |
158 |
Q |
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| T |
1518049 |
aaagatatggtcttgttattcgacctcgcaaagtaaaatccagtatt |
1518095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 281
Target Start/End: Complemental strand, 1512634 - 1512532
Alignment:
| Q |
179 |
aaggtggctgatttaaagaaaacccttcgtgattggaaaagatttaggaggttaggggttaattctactgtaaatgtctattggaacactcacgagtggt |
278 |
Q |
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|||||||| ||||| ||| |||||||||||||||||| |||||||||||||| || ||| |||| ||| ||| || |||||| | ||| ||||||| |
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| T |
1512634 |
aaggtggccgatttgaaggcaacccttcgtgattggaagcaatttaggaggttagaggctaactctaatgtgaatatcaattggacaagtcatgagtggt |
1512535 |
T |
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| Q |
279 |
gtt |
281 |
Q |
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||| |
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| T |
1512534 |
gtt |
1512532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 16643682 - 16643768
Alignment:
| Q |
74 |
ctgtgaaattatctttcattccatatcatgactcaaacaaagatatggtattgttgtttgatctcacaaagaaaaatccagtattga |
160 |
Q |
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| T |
16643682 |
ctgtggaattgtctttctttccataccatgtttcaaacaaagatatggtcttgttattggaccttacaaagtaaaatccggtattga |
16643768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 16643508 - 16643447
Alignment:
| Q |
179 |
aaggtggctgatttaaagaaaacccttcgtgattggaaaagatttaggaggttaggggttaa |
240 |
Q |
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| T |
16643508 |
aaggtggctgatttaaaggcagccctacatgattggaaaaaatttaggaggttagaggttaa |
16643447 |
T |
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