View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20920_low_12 (Length: 379)
Name: NF20920_low_12
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 66 - 368
Target Start/End: Complemental strand, 1608994 - 1608692
Alignment:
| Q |
66 |
cacattttcctataattcattgaccatagcgaggaaaaagaaaagtgtctcacaaatagtaaaaccttcaaactttaccaaatttcaatttaattactct |
165 |
Q |
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| T |
1608994 |
cacattttcctataattcattgaccatagcgaggaaaaagaaaagtgtctcacaaatagtaaaaccttcaaactttaccaaatttcaatttaattactct |
1608895 |
T |
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| Q |
166 |
gcaaatttcaaactttacaaaatctcataaaaactcatttctcactaaatcatgaaaaacaatttcaaagaccagatcacaacaatctttactcttcaat |
265 |
Q |
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| T |
1608894 |
gcaaatttcaaactttacaaaatctcataaaaactcatttctcactaaatcatgaaaaacaatttcaaagaccagatcacaacaatcttcactcttcaat |
1608795 |
T |
|
| Q |
266 |
aactttctcaaagctcataaacttcttagtcctcttaatcattatctcctaccttttatattcccttagtgatggttagtcatagcagtgatggtgtaag |
365 |
Q |
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| T |
1608794 |
aactttatcaaagctaataaacttcttattcctcttaatcattatctcctaccttttctattcccttagtgatggttagtcatagcagtgatggtgtaag |
1608695 |
T |
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| Q |
366 |
tga |
368 |
Q |
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||| |
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| T |
1608694 |
tga |
1608692 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 334
Target Start/End: Original strand, 11091455 - 11091533
Alignment:
| Q |
256 |
actcttcaataactttctcaaagctcataaacttcttagtcctcttaatcattatctcctaccttttatattcccttag |
334 |
Q |
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||||||| || ||||||||||||||||| | ||||| |||||||||||| ||||| |||||||| ||||| ||||| |
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| T |
11091455 |
actcttccatcactttctcaaagctcatcactttcttcttcctcttaatcacaatctcttaccttttttattctcttag |
11091533 |
T |
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