View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20920_low_13 (Length: 347)
Name: NF20920_low_13
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 139 - 319
Target Start/End: Original strand, 10397391 - 10397565
Alignment:
| Q |
139 |
tcacattaagctaatagcaaccacctaactaaatgtgttgaacaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcacttatat |
238 |
Q |
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| T |
10397391 |
tcacattaagctaatagcaaccacctaactaaatgtgttgaacaccatatcatcaccaaaaaccttaaaacatta------ttggtcctctcacttatat |
10397484 |
T |
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| Q |
239 |
gttgttcaacctcaacccctccgatcaatgtaagactttaacttacacttgagacttgacatatcacaacaaaatgaatca |
319 |
Q |
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| T |
10397485 |
gttgttcaacctcaacccctccgatcaatgtaagactttaacttacacttgagacttgacatatcacaacaaaatgaatca |
10397565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 10394313 - 10394271
Alignment:
| Q |
105 |
cattatatcaagaaaatggtgactcatcgctctttcacattaa |
147 |
Q |
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| T |
10394313 |
cattatatcaagaaaatggtgactcatcgctctttcacattaa |
10394271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 12 - 65
Target Start/End: Complemental strand, 10395912 - 10395859
Alignment:
| Q |
12 |
attgctcttggcccagcataatgatctaatcagtgatgctcaccttatcgatgg |
65 |
Q |
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| T |
10395912 |
attgctcttagcccaacataatgatctaatcagtgatgctcaccttatggatgg |
10395859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 302 - 332
Target Start/End: Original strand, 10397567 - 10397597
Alignment:
| Q |
302 |
tcacaacaaaatgaatcattcatcaagagat |
332 |
Q |
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| T |
10397567 |
tcacaacaaaatgaatcattcatcaagagat |
10397597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 247
Target Start/End: Original strand, 24181731 - 24181798
Alignment:
| Q |
180 |
acaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaa |
247 |
Q |
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| T |
24181731 |
acaccatatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaa |
24181798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 37660888 - 37660923
Alignment:
| Q |
215 |
atttattgatcctctcacttatatgttgttcaacct |
250 |
Q |
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| T |
37660888 |
atttattggtcctctcacttatatgttgttcaacct |
37660923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 12454066 - 12454009
Alignment:
| Q |
197 |
aaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaacctcaac |
254 |
Q |
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| T |
12454066 |
aaaaacttaaaacattagatttatgggtcatctcacttatatgttgttcaacttcaac |
12454009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 247
Target Start/End: Complemental strand, 16853741 - 16853674
Alignment:
| Q |
180 |
acaccatatcatcgccaaaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaa |
247 |
Q |
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| T |
16853741 |
acaccacatcatcacccaaaaccttaaagcattatgtatattgatcatctcacttatatgtttttcaa |
16853674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 255
Target Start/End: Complemental strand, 20117249 - 20117191
Alignment:
| Q |
197 |
aaaaccttaaaacattaaatttattgatcctctcacttatatgttgttcaacctcaacc |
255 |
Q |
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| T |
20117249 |
aaaaccttaagacattgaatttatgagtactctcacttatatgttgttcaacttcaacc |
20117191 |
T |
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