View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20920_low_14 (Length: 340)
Name: NF20920_low_14
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 18 - 324
Target Start/End: Original strand, 36324609 - 36324915
Alignment:
| Q |
18 |
ccacttctccgtaaattcactggcataccaaccggcattactcacttgcagcgaataggcgttggcctaatactatcctgcatctcgatggcaatcgcgg |
117 |
Q |
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| T |
36324609 |
ccacttctccgtaaattcactggcataccaaccggcattactcacttgcagcgaataggcgttggcctaatactatcctgcatctcgatggcaatcgcgg |
36324708 |
T |
|
| Q |
118 |
caatcatagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36324709 |
caatcatagaagtgaaaagaaaaaatgtagctagagataataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttc |
36324808 |
T |
|
| Q |
218 |
ttttcagtactttgtatttggtatagctgatatgtttacctatgtgggacttcttgagttcttctattcagaagcaccaaaagggcttaaatctacttca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36324809 |
ttttcagtactttgtatttggtatagctgatatgtttacctatgtgggacttcttgagttcttctattcagaagcaccaaaagggcttaaatctacttca |
36324908 |
T |
|
| Q |
318 |
acatgct |
324 |
Q |
| |
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||||||| |
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| T |
36324909 |
acatgct |
36324915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 324
Target Start/End: Original strand, 36331874 - 36332176
Alignment:
| Q |
22 |
ttctccgtaaattcactggcataccaaccggcattactcacttgcagcgaataggcgttggcctaatactatcctgcatctcgatggcaatcgcggcaat |
121 |
Q |
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|||| ||||||||||| |||||||||||||| | || ||| ||||||| ||||| || |||||||||||||||||||||||||||||||| || ||||| |
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| T |
36331874 |
ttcttcgtaaattcaccggcataccaaccggagtcacgcacctgcagcgcataggtgtcggcctaatactatcctgcatctcgatggcaattgcagcaat |
36331973 |
T |
|
| Q |
122 |
catagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttctttt |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36331974 |
catagaagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttctttt |
36332073 |
T |
|
| Q |
222 |
cagtactttgtatttggtatagctgatatgtttacctatgtgggacttcttgagttcttctattcagaagcaccaaaagggcttaaatctacttcaacat |
321 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
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| T |
36332074 |
cagtactttgtgtttggtatagctgatatgtttacctatgtgggacttcttgagttcttctattcagaggcaccaaaagggcttaaatctacatcaacat |
36332173 |
T |
|
| Q |
322 |
gct |
324 |
Q |
| |
|
||| |
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| T |
36332174 |
gct |
36332176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 27 - 324
Target Start/End: Original strand, 5459880 - 5460177
Alignment:
| Q |
27 |
cgtaaattcactggcataccaaccggcattactcacttgcagcgaataggcgttggcctaatactatcctgcatctcgatggcaatcgcggcaatcatag |
126 |
Q |
| |
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||||||||||| || || |||||||| |||| |||||||| || ||||| ||||| || ||||| | | | | || ||||| |||| |||| |||| |
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| T |
5459880 |
cgtaaattcaccggtattccaaccggtgttacacacttgcaacgtataggtgttggtcttatacttgcttccgtatcaatggctgtcgcttcaattatag |
5459979 |
T |
|
| Q |
127 |
aagtgaaaagaaaaaatgtagctagagacaataacatgcttgatgctgttccaggagttcaaccattacctttgagtatattttggctttcttttcagta |
226 |
Q |
| |
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|||| |||||||||| || || | ||||||||||||||||||||| | |||| | ||| ||||| ||| | || | ||||||||||||||||||||| |
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| T |
5459980 |
aagtaaaaagaaaaagagtggccaatgacaataacatgcttgatgctttaccagtatatcagccattgcctataagcacattttggctttcttttcagta |
5460079 |
T |
|
| Q |
227 |
ctttgtatttggtatagctgatatgtttacctatgtgggacttcttgagttcttctattcagaagcaccaaaagggcttaaatctacttcaacatgct |
324 |
Q |
| |
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|| ||||||| |||||||| || || |||||| | || || ||| |||| ||||||||||| ||||||||||| ||||||||||| ||||| |||| |
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| T |
5460080 |
tttcatatttggcatagctgacatattcacctatattggtctccttcagtttttctattcagaggcaccaaaaggacttaaatctacatcaacttgct |
5460177 |
T |
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