View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20920_low_18 (Length: 305)

Name: NF20920_low_18
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20920_low_18
NF20920_low_18
[»] chr4 (9 HSPs)
chr4 (12-275)||(37926528-37926791)
chr4 (19-119)||(21956833-21956933)
chr4 (22-60)||(25265225-25265263)
chr4 (15-45)||(33616208-33616238)
chr4 (12-45)||(8843897-8843930)
chr4 (12-45)||(8856861-8856894)
chr4 (15-44)||(36306757-36306786)
chr4 (15-68)||(54270588-54270641)
chr4 (22-62)||(4237370-4237410)
[»] chr6 (1 HSPs)
chr6 (15-63)||(1947865-1947913)
[»] chr1 (3 HSPs)
chr1 (15-119)||(39219225-39219329)
chr1 (15-120)||(48125700-48125805)
chr1 (15-43)||(13798205-13798233)
[»] chr5 (3 HSPs)
chr5 (15-44)||(12457483-12457512)
chr5 (16-44)||(17153136-17153164)
chr5 (15-119)||(38972888-38972992)
[»] chr8 (2 HSPs)
chr8 (19-63)||(6388579-6388623)
chr8 (15-43)||(14155498-14155526)
[»] chr3 (1 HSPs)
chr3 (15-43)||(42243353-42243381)


Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 12 - 275
Target Start/End: Original strand, 37926528 - 37926791
Alignment:
Q  12 atgaaaggggtaataaattgattttctacattcaaaatgagtttgagtatggattcagactggatacttatatccctgttacttatctcgtacccatgtt 111  Q
    ||||||||| ||||||||| |||| |||||||||  ||||||||| |||||| ||||||| || |||||||||||||||||||| ||| |||||||||||    
T  37926528 atgaaagggataataaattaatttactacattcaggatgagtttgggtatgggttcagaccgggtacttatatccctgttacttgtctggtacccatgtt 37926627  T
Q  112 ttaaaatcattgtttaaaattaaattaaaggatgataaggataattttgcccaataaatttgatatctccaccaagttctttcatgtaggctgttggggc 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37926628 ttaaaatcattgtttaaaattaaattaaaggatgataaggataattttgcccaataaatttgatatctccaccaagttctttcatgtaggctgttggggc 37926727  T
Q  212 aaaattagacttttagtaaaggatatttttggccgtttatcttctagggacaagttttaccttc 275  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  37926728 aaaattagacttttagtaaaggatatttttggccgtttaccttctagagacaagttttaccttc 37926791  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 19 - 119
Target Start/End: Complemental strand, 21956933 - 21956833
Alignment:
Q  19 gggtaataaattgattttctacattcaaaatgagtttgagtatggattcagactggatacttatatccctgttacttatctcgtacccatgttttaaaat 118  Q
    ||||||||||||||||||||||||||  || ||||||| |||||| ||| |  |||  || |||||||| |||||| ||  ||||||| |||||||||||    
T  21956933 gggtaataaattgattttctacattcgtaacgagtttgggtatgggttcggggtgggcacctatatccccgttactcattccgtacccgtgttttaaaat 21956834  T
Q  119 c 119  Q
    |    
T  21956833 c 21956833  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 25265263 - 25265225
Alignment:
Q  22 taataaattgattttctacattcaaaatgagtttgagta 60  Q
    ||||||||||||||||||||||| | |||||||||||||    
T  25265263 taataaattgattttctacattcgagatgagtttgagta 25265225  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 45
Target Start/End: Complemental strand, 33616238 - 33616208
Alignment:
Q  15 aaaggggtaataaattgattttctacattca 45  Q
    |||||||||||||||||||||||||||||||    
T  33616238 aaaggggtaataaattgattttctacattca 33616208  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 8843930 - 8843897
Alignment:
Q  12 atgaaaggggtaataaattgattttctacattca 45  Q
    ||||||||||||||||||| ||||||||||||||    
T  8843930 atgaaaggggtaataaattaattttctacattca 8843897  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 45
Target Start/End: Complemental strand, 8856894 - 8856861
Alignment:
Q  12 atgaaaggggtaataaattgattttctacattca 45  Q
    ||||||||||||||||||| ||||||||||||||    
T  8856894 atgaaaggggtaataaattaattttctacattca 8856861  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 36306757 - 36306786
Alignment:
Q  15 aaaggggtaataaattgattttctacattc 44  Q
    ||||||||||||||||||||||||||||||    
T  36306757 aaaggggtaataaattgattttctacattc 36306786  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 68
Target Start/End: Original strand, 54270588 - 54270641
Alignment:
Q  15 aaaggggtaataaattgattttctacattcaaaatgagtttgagtatggattca 68  Q
    |||| ||||||||||||||||||||||||| | | |||||||| ||||| ||||    
T  54270588 aaagaggtaataaattgattttctacattctagaagagtttgaatatgggttca 54270641  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 62
Target Start/End: Complemental strand, 4237410 - 4237370
Alignment:
Q  22 taataaattgattttctacattcaaaatgagtttgagtatg 62  Q
    ||||||||| ||||||||||||  |||||||||||||||||    
T  4237410 taataaattaattttctacatttgaaatgagtttgagtatg 4237370  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 63
Target Start/End: Complemental strand, 1947913 - 1947865
Alignment:
Q  15 aaaggggtaataaattgattttctacattcaaaatgagtttgagtatgg 63  Q
    |||||||||||||||||||||||||||||   || ||||||||||||||    
T  1947913 aaaggggtaataaattgattttctacatttggaacgagtttgagtatgg 1947865  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 39219225 - 39219329
Alignment:
Q  15 aaaggggtaataaattgattttctacattcaaaatgagtttgagtatggattcagactggatacttatatccctgttacttatctcgtacccatgtttta 114  Q
    |||| ||||||||||| |||||||||||| | || ||||||| |||||| ||| |  ||| ||| | |||||| ||||||| |  ||||||| |||||||    
T  39219225 aaagaggtaataaattaattttctacatttagaacgagtttgggtatgggttcggggtgggtacatgtatccccgttacttgttccgtacccgtgtttta 39219324  T
Q  115 aaatc 119  Q
    |||||    
T  39219325 aaatc 39219329  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 120
Target Start/End: Complemental strand, 48125805 - 48125700
Alignment:
Q  15 aaaggggtaataaattgattttctacattcaaaatgagtttgagtatggattcagactggatacttatatccctgttacttatctcgtacccatgtttta 114  Q
    |||| |||| ||||||||||||||||||||   | ||||||| |||||| ||| |  ||||||| |||||||  |||||   || ||||||| |||||||    
T  48125805 aaagcggtagtaaattgattttctacattcgcgacgagtttgggtatgggttcggggtggatacctatatcctcgttacccgtcccgtacccgtgtttta 48125706  T
Q  115 aaatca 120  Q
    ||||||    
T  48125705 aaatca 48125700  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 13798205 - 13798233
Alignment:
Q  15 aaaggggtaataaattgattttctacatt 43  Q
    |||||||||||||||||||||||||||||    
T  13798205 aaaggggtaataaattgattttctacatt 13798233  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 12457483 - 12457512
Alignment:
Q  15 aaaggggtaataaattgattttctacattc 44  Q
    ||||||||||||||||||||||||||||||    
T  12457483 aaaggggtaataaattgattttctacattc 12457512  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 17153136 - 17153164
Alignment:
Q  16 aaggggtaataaattgattttctacattc 44  Q
    |||||||||||||||||||||||||||||    
T  17153136 aaggggtaataaattgattttctacattc 17153164  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 38972888 - 38972992
Alignment:
Q  15 aaaggggtaataaattgattttctacattcaaaatgagtttgagtatggattcagactggatacttatatccctgttacttatctcgtacccatgtttta 114  Q
    |||||| ||||||||||||||| | ||||  | ||| |||||||||||| ||| |  ||| ||| ||||| || ||||| |||| | ||||||||||||     
T  38972888 aaagggttaataaattgattttatgcatttgagatgggtttgagtatgggttcggggtgggtacctatattcccgttacctatcccatacccatgttttg 38972987  T
Q  115 aaatc 119  Q
    |||||    
T  38972988 aaatc 38972992  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 63
Target Start/End: Complemental strand, 6388623 - 6388579
Alignment:
Q  19 gggtaataaattgattttctacattcaaaatgagtttgagtatgg 63  Q
    |||||||||||||||||||||||||||  ||| ||||||| ||||    
T  6388623 gggtaataaattgattttctacattcaggatgggtttgagcatgg 6388579  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 14155498 - 14155526
Alignment:
Q  15 aaaggggtaataaattgattttctacatt 43  Q
    |||||||||||||||||||||||||||||    
T  14155498 aaaggggtaataaattgattttctacatt 14155526  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 43
Target Start/End: Original strand, 42243353 - 42243381
Alignment:
Q  15 aaaggggtaataaattgattttctacatt 43  Q
    |||||||||||||||||||||||||||||    
T  42243353 aaaggggtaataaattgattttctacatt 42243381  T

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