View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20920_low_22 (Length: 259)
Name: NF20920_low_22
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 20 - 244
Target Start/End: Complemental strand, 8375958 - 8375734
Alignment:
| Q |
20 |
cttagctatctcatcttgcagtacctcacatgttccatcgttaccttagaccctctgttcccttatttaaacccaaaccgtttgtcgattcaaataacaa |
119 |
Q |
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| T |
8375958 |
cttagctatctcatcttgcagtacctcacatgttccatcgttaccttagaccctctgttcccttatttaaacccaaaccttttgtggattcaaataacaa |
8375859 |
T |
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| Q |
120 |
acaatatatgtaaatacaattacaaattccatttttgtattgtatccttctacaatccttcacattgggttttaagcattcaacatattaattagcaata |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
8375858 |
acaatatatgtaaatacaattacaaattccatttttgtattgtatccttctacaatccttcacattgggttttaagcattcaacatattaattagcaaga |
8375759 |
T |
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| Q |
220 |
tcaaaatgaccaaagttatgtttat |
244 |
Q |
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||||||||||||||||||||||||| |
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| T |
8375758 |
tcaaaatgaccaaagttatgtttat |
8375734 |
T |
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