View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20920_low_23 (Length: 254)

Name: NF20920_low_23
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20920_low_23
NF20920_low_23
[»] chr6 (5 HSPs)
chr6 (96-137)||(5559953-5559994)
chr6 (89-153)||(10381624-10381688)
chr6 (191-238)||(10381727-10381778)
chr6 (205-234)||(10408462-10408491)
chr6 (99-143)||(33913460-33913504)


Alignment Details
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 137
Target Start/End: Complemental strand, 5559994 - 5559953
Alignment:
Q  96 ttgataacgcaagtttgtgacctaagtaaggacattaagatg 137  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  5559994 ttgataacgcaagtttgtgacctaagtaagggcattaagatg 5559953  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 89 - 153
Target Start/End: Original strand, 10381624 - 10381688
Alignment:
Q  89 gctgggtttgataacgcaagtttgtgacctaagtaaggacattaagatgctgaaaattcttttga 153  Q
    |||| |||||||||||||||||| ||||||||||||| ||||||| ||  | |||||||||||||    
T  10381624 gctgagtttgataacgcaagtttctgacctaagtaagaacattaaaatattaaaaattcttttga 10381688  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 238
Target Start/End: Original strand, 10381727 - 10381778
Alignment:
Q  191 cacatagtgttcggtagcgcctcaaa----taagagcacctcaacatagaaa 238  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  10381727 cacatagtgttcggtagcgcctcaaataattaagagcacctcaacatagaaa 10381778  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 205 - 234
Target Start/End: Complemental strand, 10408491 - 10408462
Alignment:
Q  205 tagcgcctcaaataagagcacctcaacata 234  Q
    ||||||||||||||||||||||||||||||    
T  10408491 tagcgcctcaaataagagcacctcaacata 10408462  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 33913504 - 33913460
Alignment:
Q  99 ataacgcaagtttgtgacctaagtaaggacattaagatgctgaaa 143  Q
    |||||| ||| ||||||||||| ||| ||||||||||||||||||    
T  33913504 ataacgtaagattgtgacctaaataaagacattaagatgctgaaa 33913460  T

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