View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20920_low_31 (Length: 236)
Name: NF20920_low_31
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_low_31 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-131; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-131
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 38633038 - 38632803
Alignment:
| Q |
1 |
ccactgtactttactttgtaagcaccaggttgccccattttatcacttttattggtttcttcagcttctcccttatttatttcaacattgttctttttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38633038 |
ccactgtactttactttgtaagcaccaggttgccccattttatcacttttattggtttcttcagcttctcccttatttatttcaacattgttctttttcc |
38632939 |
T |
|
| Q |
101 |
atttccttgaatcttacatcataagtctatggaagataccttagggtttttctcatgttcatgattatgacagccaatatttcaacaaactaaagaggag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38632938 |
atttccttgaatcttacatcataagtctatggaagataccttagggtttttctcatgttcatgattatgacagccaatatttcaacaaactaaagaggag |
38632839 |
T |
|
| Q |
201 |
aacagaatgactaaaaaacctgtggtacttgttctt |
236 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
38632838 |
aacagaatgactaaaaaacctgtggtacttgttctt |
38632803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University