View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20920_low_33 (Length: 235)
Name: NF20920_low_33
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_low_33 |
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| [»] scaffold0536 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 48965748 - 48965547
Alignment:
| Q |
16 |
agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48965748 |
agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattccaagcgacataactcagtgttgtacataagctttggaagc |
48965649 |
T |
|
| Q |
116 |
ctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaag |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48965648 |
ctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccccttaataacgggaaag |
48965549 |
T |
|
| Q |
216 |
ag |
217 |
Q |
| |
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|| |
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|
| T |
48965548 |
ag |
48965547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 198
Target Start/End: Original strand, 48912106 - 48912284
Alignment:
| Q |
20 |
gagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcctct |
119 |
Q |
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||||| ||| ||||||||| ||||| ||||| ||||||||||||||||| || ||||| | | ||||||| ||| |||||||| |||||||||||| | |
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| T |
48912106 |
gagagaggagaagagagtgttgtgagtgtgcacgagtgtttgagttggcttaactcgaaacaagataactcggtggtgtacatatgctttggaagccaat |
48912205 |
T |
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| Q |
120 |
gtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattcc |
198 |
Q |
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||| || | ||||||||| ||||||||||||||||| | || ||||||||| |||| || || ||||||||| |||| |
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| T |
48912206 |
gtcatttttcggataaacaactttatgagattgcgtgcgggattgaagcatcgagtcacgaattcatatgggttgttcc |
48912284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 60 - 198
Target Start/End: Complemental strand, 48958522 - 48958384
Alignment:
| Q |
60 |
tgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcctctg-tcgttatcaggataaacagctttatgagattgcgtgtg |
158 |
Q |
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||||||||||||| | |||| ||||||||||||||||||||||| ||||||||||| | || | ||||| |||||||| ||||||||||||||||||| |
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| T |
48958522 |
tgagttggctcaacttgaagagacataactcagtgttgtacatatgctttggaagcatatgttatttatc-tgataaacaactttatgagattgcgtgtg |
48958424 |
T |
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| Q |
159 |
caatagaagcatcgggtcatgattttatatgggttattcc |
198 |
Q |
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||||||||||| ||||| || ||| |||||||| |||| |
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| T |
48958423 |
ggatagaagcatcaggtcacgaatttgtatgggttgttcc |
48958384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 102
Target Start/End: Complemental strand, 48962713 - 48962627
Alignment:
| Q |
16 |
agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacat |
102 |
Q |
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|||||| |||||||| ||||||| ||| |||| ||||||||| || | ||||| ||||| |||||||||||||||||||||||||| |
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| T |
48962713 |
agcagaaaggggacatgagagtgttgtgggcgtacaagagtgtctgtggtggcttaattcaaagcgacataactcagtgttgtacat |
48962627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: scaffold0536
Description:
Target: scaffold0536; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 16 - 198
Target Start/End: Original strand, 6268 - 6450
Alignment:
| Q |
16 |
agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagc |
115 |
Q |
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|||| ||||||||||| | |||| ||||| ||||| |||||| |||||||||| | ||||||| | |||||||||||||||||||| ||||||||||| |
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| T |
6268 |
agcacagaggggacaacaaagtgttgtgagtgtgcatgagtgtctgagttggctagactcgaagccagataactcagtgttgtacatatgctttggaagc |
6367 |
T |
|
| Q |
116 |
ctctgtcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattcc |
198 |
Q |
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| || | || | ||||||||| ||||| |||||||| |||| ||||||||||||||||| | || ||||||||| |||| |
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| T |
6368 |
ttatgccttttcccggataaacaactttacgagattgcatgtgggatagaagcatcgggtcacaaattcatatgggttgttcc |
6450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0536; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 156
Target Start/End: Original strand, 10254 - 10390
Alignment:
| Q |
18 |
cagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcct |
117 |
Q |
| |
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||||||| ||| || |||||| ||||| ||||| |||||| |||||||||| || | ||||||| ||| |||||||||||||| ||||||||||||| |
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| T |
10254 |
cagagagaggagaacagagtgttgtgagtgtgcatgagtgtctgagttggcttaacttgaagcgagata--tcagtgttgtacatttgctttggaagcct |
10351 |
T |
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| Q |
118 |
ctgtcgttatcaggataaacagctttatgagattgcgtg |
156 |
Q |
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||| || | |||||||| ||||||||||||||||| |
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| T |
10352 |
atgttatttttcagataaacaactttatgagattgcgtg |
10390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 12589926 - 12590109
Alignment:
| Q |
16 |
agcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagc |
115 |
Q |
| |
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|||||| |||||| | ||||||| |||| ||||||||||||| |||||||||| || ||||||||| ||||||| |||||||||||| ||||||| ||| |
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| T |
12589926 |
agcagataggggaaatgagagtgttgtgaacgtgcaagagtgtctgagttggctaaactcgaagcgagataactctgtgttgtacatatgctttgggagc |
12590025 |
T |
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| Q |
116 |
ctctg-tcgttatcaggataaacagctttatgagattgcgtgtgcaatagaagcatcgggtcatgattttatatgggttattccc |
199 |
Q |
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| || | || ||| |||||||| |||||||||||| |||||| ||||||||||| || || || || |||||||||||||| |
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| T |
12590026 |
atatgctatttctca-gataaacaactttatgagatttcgtgtggcatagaagcatcaggccacgaattcgtatgggttattccc |
12590109 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 12483222 - 12483322
Alignment:
| Q |
17 |
gcagagaggggacaagagagtgcagtgagcgtgcaagagtgtttgagttggctcaattcgaagcgacataactcagtgttgtacataagctttggaagcc |
116 |
Q |
| |
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|||||||||||| | ||||||| ||||||||||| |||||| |||||||| || || |||| | | || ||||||||||||||| ||||||| |||| |
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| T |
12483222 |
gcagagaggggaaacgagagtgttgtgagcgtgcatgagtgtcaaagttggctaaactcaaagcaagaaaattcagtgttgtacatatgctttgggagcc |
12483321 |
T |
|
| Q |
117 |
t |
117 |
Q |
| |
|
| |
|
|
| T |
12483322 |
t |
12483322 |
T |
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