View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20920_low_34 (Length: 227)

Name: NF20920_low_34
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20920_low_34
NF20920_low_34
[»] chr4 (7 HSPs)
chr4 (11-227)||(30227412-30227628)
chr4 (81-227)||(30047029-30047175)
chr4 (81-227)||(30061370-30061516)
chr4 (81-227)||(30030722-30030868)
chr4 (113-225)||(30222016-30222128)
chr4 (33-70)||(30047238-30047275)
chr4 (33-70)||(30061579-30061616)
[»] scaffold2055 (2 HSPs)
scaffold2055 (83-227)||(533-677)
scaffold2055 (31-70)||(969-1008)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 227
Target Start/End: Complemental strand, 30227628 - 30227412
Alignment:
Q  11 tttaaccactcatctaaaactttattttcattcataaattaataattttgaaagctaagacatagtggtttctttgatttattaatgttctctattttat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30227628 tttaaccactcatctaaaactttattttcattcataaattaataattttgaaagctaagacatagtggtttctttgatttattaatgttctctattttat 30227529  T
Q  111 tgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgttcttatgtcaaacattgtagggccagtagagaagatgact 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30227528 tgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaactcaagtgttcttatgtcaaacattgtagggccagtagagaagatgact 30227429  T
Q  211 ttggcaaatcatccagt 227  Q
    |||||||||||||||||    
T  30227428 ttggcaaatcatccagt 30227412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 30047175 - 30047029
Alignment:
Q  81 tctttgatttattaatgttctctattttattgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgttcttatgtca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||| |||||| ||||||||||| |||||     
T  30047175 tctttgatttattaatgttctctattttattgggtttgtgtttcaggcagtagctaaaataatctacaacacaattgggaactcaagtgttctaatgtct 30047076  T
Q  181 aacattgtagggccagtagagaagatgactttggcaaatcatccagt 227  Q
    ||| | ||||| || ||||||||||||||||||||||||||||||||    
T  30047075 aacctcgtaggaccggtagagaagatgactttggcaaatcatccagt 30047029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 30061516 - 30061370
Alignment:
Q  81 tctttgatttattaatgttctctattttattgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgttcttatgtca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||| |||||| ||||||||||| |||||     
T  30061516 tctttgatttattaatgttctctattttattgggtttgtgtttcaggcagtagctaaaataatctacaacacaattgggaactcaagtgttctaatgtct 30061417  T
Q  181 aacattgtagggccagtagagaagatgactttggcaaatcatccagt 227  Q
    ||| | ||||| || ||||||||||||||||||||||||||||||||    
T  30061416 aacctcgtaggaccggtagagaagatgactttggcaaatcatccagt 30061370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 81 - 227
Target Start/End: Complemental strand, 30030868 - 30030722
Alignment:
Q  81 tctttgatttattaatgttctctattttattgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgttcttatgtca 180  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||| | |||| ||||||||| |||||||     
T  30030868 tctttgatttattaatgttctctattttattgggtttgtgtttcaggcagtagctaaaataatctacaacacaattaggaactcaagtgtttttatgtct 30030769  T
Q  181 aacattgtagggccagtagagaagatgactttggcaaatcatccagt 227  Q
    ||| | ||||| ||  |||| || ||| |||||||||| ||||||||    
T  30030768 aacctcgtaggaccgatagaaaaaatggctttggcaaaccatccagt 30030722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 113 - 225
Target Start/End: Original strand, 30222016 - 30222128
Alignment:
Q  113 ggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgttcttatgtcaaacattgtagggccagtagagaagatgacttt 212  Q
    |||| |||||||||   |||||||||||||||||||||||||  || |||||||||||| |||| || ||| | ||||| ||||||||||| ||| ||||    
T  30222016 ggttggtgtttcagtctgtagctaaaataatctataacacaatgggaaattcaagtgttgttatctctaacttggtaggaccagtagagaaaatggcttt 30222115  T
Q  213 ggcaaatcatcca 225  Q
    |||||||||||||    
T  30222116 ggcaaatcatcca 30222128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 30047275 - 30047238
Alignment:
Q  33 tattttcattcataaattaataattttgaaagctaaga 70  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  30047275 tattttcattcataaattaataattttgaaagcaaaga 30047238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 30061616 - 30061579
Alignment:
Q  33 tattttcattcataaattaataattttgaaagctaaga 70  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  30061616 tattttcattcataaattaataattttgaaagcaaaga 30061579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2055 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold2055
Description:

Target: scaffold2055; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 83 - 227
Target Start/End: Complemental strand, 677 - 533
Alignment:
Q  83 tttgatttattaatgttctctattttattgggtttgtgtttcaggtggtagctaaaataatctataacacaactgggaattcaagtgttcttatgtcaaa 182  Q
    |||||||||||||||||||||  || ||| |||||||||||||||  ||||||||| ||||||| ||||| | |||||| ||||||||||||||||| ||    
T  677 tttgatttattaatgttctctgattaatttggtttgtgtttcaggcagtagctaaagtaatctacaacactattgggaactcaagtgttcttatgtctaa 578  T
Q  183 cattgtagggccagtagagaagatgactttggcaaatcatccagt 227  Q
    | | ||||| |||||||| || ||| |||||||||||||||||||    
T  577 cctcgtaggaccagtagaaaaaatggctttggcaaatcatccagt 533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2055; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 1008 - 969
Alignment:
Q  31 tttattttcattcataaattaataattttgaaagctaaga 70  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  1008 tttatttttattcataaactaataattttgaaagctaaga 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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