View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20920_low_4 (Length: 526)

Name: NF20920_low_4
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20920_low_4
NF20920_low_4
[»] chr1 (3 HSPs)
chr1 (13-510)||(46337388-46337885)
chr1 (67-118)||(20053948-20053999)
chr1 (70-119)||(50002574-50002623)
[»] chr5 (3 HSPs)
chr5 (74-113)||(30719678-30719717)
chr5 (72-125)||(24182107-24182160)
chr5 (346-386)||(38061702-38061742)
[»] scaffold0065 (1 HSPs)
scaffold0065 (70-120)||(62973-63023)
[»] scaffold0002 (1 HSPs)
scaffold0002 (70-118)||(154532-154580)
[»] chr8 (1 HSPs)
chr8 (70-118)||(21315978-21316026)
[»] chr7 (3 HSPs)
chr7 (70-118)||(2193486-2193534)
chr7 (71-119)||(7646646-7646694)
chr7 (70-118)||(13122372-13122420)
[»] chr4 (1 HSPs)
chr4 (70-118)||(24629298-24629346)
[»] chr3 (1 HSPs)
chr3 (70-118)||(13150422-13150470)


Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 13 - 510
Target Start/End: Complemental strand, 46337885 - 46337388
Alignment:
Q  13 aatatgggttatcatctcagaagtttctcaaaaagtgtgttagtaagaatatggcatgctgaaaagactcgtattaatttgtggggttaatcgacaatcc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46337885 aatatgggttatcatctcagaagtttctcaaaaagtgtgttagtaagaatatggcatgctgaaaagactcgtattaatttgtggggttaatcgacaatcc 46337786  T
Q  113 tgaaagtaatttggacgttacataaatcacacttgattagttgggaagtttgtttcttacctnnnnnnntgtaggccttgggattagaagtcaacattaa 212  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||| ||| ||    
T  46337785 tgaaagtaatttgggcgttacataaatcacacttgattaattgggaagtttgtttcttacctaaaaaaatgtaggccttgggattagaagtcatcatcaa 46337686  T
Q  213 atgaatgaacttgtccaaatgtaaatgctttggaatataatcaaaagacatgatgatctcttttaccctacctgtacaatacatatgttaaaaataatga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46337685 atgaatgaacttgtccaaatgtaaatgctttggaatataatcaaaagacatgatgatctcttttaccctacctgtacaatacatatgttaaaaataatga 46337586  T
Q  313 tttgcatgttaaattaaaatcaactcttaactctatgactctcctttatggaaagatttaacaagtatttgggatcagtttcaaaatcatattgtgtagc 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46337585 tttgcatgttaaattaaaatcaactcttaactctatgactctcctttatggaaagatttaacaagtatttgggatcagtttcaaaatcatattgtgtagc 46337486  T
Q  413 agttgtgatatttgaatcatattagcttttggatggttaagtggaatccttgtagagcttctctcatgttaacttatattcgaccttcgattgataat 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46337485 agttgtgatatttgaatcatattagcttttggatggttaagtggaatccttgtagagcttctctcatgttaacttatattcgaccttcgattgataat 46337388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 20053999 - 20053948
Alignment:
Q  67 catgctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 118  Q
    |||||||||||||||||| ||  |||||||||| | ||||||||||||||||    
T  20053999 catgctgaaaagactcgtgttggtttgtggggtcagtcgacaatcctgaaag 20053948  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 50002623 - 50002574
Alignment:
Q  70 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagt 119  Q
    ||||||||||||||| ||  |||||||||| | |||||||||||||||||    
T  50002623 gctgaaaagactcgtgttggtttgtggggtcagtcgacaatcctgaaagt 50002574  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 74 - 113
Target Start/End: Complemental strand, 30719717 - 30719678
Alignment:
Q  74 aaaagactcgtattaatttgtggggttaatcgacaatcct 113  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  30719717 aaaagactcgtattaatttgtggggtcaatcgccaatcct 30719678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 125
Target Start/End: Complemental strand, 24182160 - 24182107
Alignment:
Q  72 tgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagtaatttg 125  Q
    |||||||| |||| ||  |||||||||||| ||||||||||||||||| |||||    
T  24182160 tgaaaagattcgtgttggtttgtggggttagtcgacaatcctgaaagtcatttg 24182107  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 346 - 386
Target Start/End: Original strand, 38061702 - 38061742
Alignment:
Q  346 tatgactctcctttatggaaagatttaacaagtatttggga 386  Q
    ||||| |||||||||||||||| ||||||| ||||||||||    
T  38061702 tatgattctcctttatggaaagctttaacatgtatttggga 38061742  T

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Target: scaffold0065 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 63023 - 62973
Alignment:
Q  70 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagta 120  Q
    ||||||||||||||||||  |||||||||| | ||| ||||||||||||||    
T  63023 gctgaaaagactcgtattggtttgtggggtcagtcggcaatcctgaaagta 62973  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 154532 - 154580
Alignment:
Q  70 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 118  Q
    ||||||||||||||| || ||||||||||| | |||||||| |||||||    
T  154532 gctgaaaagactcgtgttgatttgtggggtcagtcgacaatgctgaaag 154580  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 21316026 - 21315978
Alignment:
Q  70 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 118  Q
    ||||||||||||||| ||  |||||||||| ||||||||||||| ||||    
T  21316026 gctgaaaagactcgtgttggtttgtggggtcaatcgacaatcctaaaag 21315978  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 118
Target Start/End: Original strand, 2193486 - 2193534
Alignment:
Q  70 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 118  Q
    ||||||||||||||| || ||||||||||| | ||| ||||||||||||    
T  2193486 gctgaaaagactcgtgttgatttgtggggtcagtcggcaatcctgaaag 2193534  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 7646646 - 7646694
Alignment:
Q  71 ctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaagt 119  Q
    |||||||||||||| ||  |||||||||||| ||||||||||| |||||    
T  7646646 ctgaaaagactcgtgttggtttgtggggttagtcgacaatcctaaaagt 7646694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 13122420 - 13122372
Alignment:
Q  70 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 118  Q
    ||||||||||||||| ||  |||||||||| ||||| ||||||||||||    
T  13122420 gctgaaaagactcgtgttggtttgtggggtcaatcggcaatcctgaaag 13122372  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 24629346 - 24629298
Alignment:
Q  70 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 118  Q
    ||||||||||||||| ||| |||||||||| | ||| ||||||||||||    
T  24629346 gctgaaaagactcgtgttagtttgtggggtcagtcggcaatcctgaaag 24629298  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 118
Target Start/End: Complemental strand, 13150470 - 13150422
Alignment:
Q  70 gctgaaaagactcgtattaatttgtggggttaatcgacaatcctgaaag 118  Q
    ||||||||||||||| || ||||||||||| | |||||||| |||||||    
T  13150470 gctgaaaagactcgtgttgatttgtggggtcagtcgacaatgctgaaag 13150422  T

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