View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20920_low_6 (Length: 449)
Name: NF20920_low_6
Description: NF20920
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20920_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 57 - 445
Target Start/End: Complemental strand, 8752462 - 8752076
Alignment:
| Q |
57 |
ttaactcgaatataagttagttcttgctccctttatattttgtttggttaatgaa-ggaaagataattatttattcatttagataactgt----gtatat |
151 |
Q |
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| T |
8752462 |
ttaactcgaatataagttagttcttgctccctttatattttgtttggttaatgaaaggaaagataattatttattcatttagataattgtttgtgtatat |
8752363 |
T |
|
| Q |
152 |
atggggatccactaaccctgcttgat--------gtatacattaattttcatcaatgaaaccatcaaactaataattcttaatagttgataaaatttgta |
243 |
Q |
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| T |
8752362 |
atggggatccactaaccctgcttgataactcactgtatacattaattttcatcaatgaaaccatcaaactaataattcttaatagttgataaaatttgta |
8752263 |
T |
|
| Q |
244 |
aagtttctgtaattttaaaaaattgtaatgtttcgtacaatcatagaaatattagatacttaagttcaattcaatgtataatgcactgtttgaaaatata |
343 |
Q |
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| T |
8752262 |
aagtttctgtaatttttaaaaattgtaatgtttcatacaatcatagaaatattagatacttaagttcaattcaatgcataatgcactgtttgaaaatata |
8752163 |
T |
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| Q |
344 |
aataaaacatttattattaccgatatccaaactctttaaatatttattataagtgtatttgttgtcacttaaattaaattgtatatttctttcatctcac |
443 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
8752162 |
aataaaa---------------atatccaaattctgtaaatatttattataagtgtatttgttgtcacttaaattaaattgtatatttctttcatttcac |
8752078 |
T |
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