View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20921_high_1 (Length: 615)
Name: NF20921_high_1
Description: NF20921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20921_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 74; Significance: 1e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 21153169 - 21153254
Alignment:
| Q |
3 |
gcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
21153169 |
gcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataataaa |
21153254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 21160304 - 21160389
Alignment:
| Q |
3 |
gcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |
|
|
| T |
21160304 |
gcaacaaatactaacaaattttttaatacaaataatactacagacaggtacgttaaacacaaagtatgcgaagagtagataataaa |
21160389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 21164110 - 21164195
Alignment:
| Q |
3 |
gcaacaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaa |
88 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
21164110 |
gcaacaaatactaacaaattttttaatacaaataatactatagacaggtacgttaagcacaaagtatgcgaagagtagataataaa |
21164195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 111
Target Start/End: Original strand, 2717829 - 2717933
Alignment:
| Q |
6 |
acaaatactaacaaattttttaatacaaataatactacagacaggtacattaagcataaagtatgcgaagagtagataataaaggataacaaaaagacga |
105 |
Q |
| |
|
|||||||||||| | ||||||||| ||||||||| || |||| || |||||||| ||||| ||| |||||||||||| ||||||||||||| || ||| |
|
|
| T |
2717829 |
acaaatactaacta-ttttttaatgcaaataatatcactgacaactatattaagcacaaagtgtgccaagagtagataaaaaaggataacaaagaggcga |
2717927 |
T |
|
| Q |
106 |
tacaat |
111 |
Q |
| |
|
||||| |
|
|
| T |
2717928 |
aacaat |
2717933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Original strand, 2718025 - 2718070
Alignment:
| Q |
204 |
aaaagaactttacaatctacttctttggctactctacatgcatatc |
249 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2718025 |
aaaaaaactttacaatgtacttctttggctactctacatgcatatc |
2718070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 22343565 - 22343631
Alignment:
| Q |
103 |
cgatacaatgccaaaacgtcacaaaactacagccaccaaaagaacaaacacaacactaccaaaacct |
169 |
Q |
| |
|
||||||||||| |||| | |||||||| || ||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
22343565 |
cgatacaatgctaaaatggcacaaaacaccaaccaccaaaacaacaaacacaaaactaccaaaacct |
22343631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University