View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20921_high_3 (Length: 339)
Name: NF20921_high_3
Description: NF20921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20921_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 14 - 321
Target Start/End: Complemental strand, 20616402 - 20616098
Alignment:
| Q |
14 |
atggtcgcttaaatgatcatgagtagcagattcaacaacaatccaagatctaacaagactccaaagagaaataaaagagagacaagattaaaacacatga |
113 |
Q |
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| T |
20616402 |
atggtcgcttaaatgatcctgagtaacggattcaacaccaatccaagatctaacaagactccaaagagaagtaaaagagggacaaga---aaacacatga |
20616306 |
T |
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| Q |
114 |
tgtgccgactctatcgctccacaccctatcacacaatattaatatcttaccattgaattaagatatcatagagattctcatgtatagttatgactcaagt |
213 |
Q |
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| T |
20616305 |
tgagcagactctatcactccacaccctgtcacacaatattaatatcttaccattgaattaagataacatagagattctcatttatagttatgactcgagt |
20616206 |
T |
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| Q |
214 |
gtctaataagttgcagaactataaacaaaacaaacgnnnnnnntgtagaattagatttgctcagtgtcacaaatttcatatgtttgatgatagttgtaca |
313 |
Q |
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| T |
20616205 |
gcctaataagttgcagaactataaacaaaacaaacgaaaaaaatatagaattagatttgctcagtgtcacaaatttcatatgtttgatgatagttgtaca |
20616106 |
T |
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| Q |
314 |
attgatat |
321 |
Q |
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|||||||| |
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| T |
20616105 |
attgatat |
20616098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 145 - 316
Target Start/End: Complemental strand, 20620352 - 20620179
Alignment:
| Q |
145 |
cacaatattaatatcttaccattgaattaagatatcatagagattctcatgtatagttat--gactcaagtgtctaataagttgcagaactataaacaaa |
242 |
Q |
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| T |
20620352 |
cacaatatcaatatcttaccattgaattaagatatcataaagattctcatgtatagtcatgagactcaagtgtctaataagttgcagaattataaacaaa |
20620253 |
T |
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| Q |
243 |
acaaacgnnnnnnntgtagaattagatttgctcagtgtcacaaatttcatatgtttgatgatagttgtacaatt |
316 |
Q |
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| T |
20620252 |
acaaacaaaaataatgtagaactagatttgctgagtgtcacaaatctcatatgtttgatgatagttgtacaatt |
20620179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 145 - 321
Target Start/End: Original strand, 12058919 - 12059097
Alignment:
| Q |
145 |
cacaatattaatatcttaccattgaattaagatatcatagagattctcatgtatagttat--gactcaagtgtctaataagttgcagaactataaacaaa |
242 |
Q |
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|||||||| |||||| ||||||| ||||||||||||||| ||||||| ||||||||| || |||||| ||||| |||||||||||||| |||||||||| |
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| T |
12058919 |
cacaatatcaatatcctaccattaaattaagatatcataaagattctaatgtatagtcatgagactcatgtgtcaaataagttgcagaattataaacaaa |
12059018 |
T |
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| Q |
243 |
acaaacgnnnnnnntgtagaattagatttgctcagtgtcacaaatttcatatgtttgatgatagttgtacaattgatat |
321 |
Q |
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| T |
12059019 |
acaaacaaaaataatgtagaactagatttgctgagtgtcacaaatctcatatgtttgatgatagttgtacaattaatat |
12059097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 9909610 - 9909710
Alignment:
| Q |
38 |
agcagattcaacaacaatccaagatctaacaagactccaaagagaaataaaagagagacaagattaaaacacatgatgtgccgactctatcgctccacac |
137 |
Q |
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|||| |||||||| |||||| |||||||||||| |||||| ||| ||||||| ||||| || ||||||||||| |||||||| | ||||||||| |
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| T |
9909610 |
agcaaattcaacactaatccataatctaacaagaccccaaagggaatcaaaagagggacaatataggaacacatgatgagccgactccgtggctccacac |
9909709 |
T |
|
| Q |
138 |
c |
138 |
Q |
| |
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| |
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| T |
9909710 |
c |
9909710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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