View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20921_high_6 (Length: 233)
Name: NF20921_high_6
Description: NF20921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20921_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 8344742 - 8344557
Alignment:
| Q |
25 |
tgtcagatcatgaaaaaattaatttaccaactcaatccaatatttgtttccaatatttttcttgagtcgggcttgtttaaagtatagcttgactgacaag |
124 |
Q |
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| T |
8344742 |
tgtcagatcatgaaaaaattaatttaccaactcaatccaatatttgttttcaatatttttcttgagtcgggcttgtttaaagtatagcttgactgacaag |
8344643 |
T |
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| Q |
125 |
taaaccatattattgtgacctatataattccatctctacatgtacgtcttgaaagagtaaagaaaacaacaacgtagagtcttggt |
210 |
Q |
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| T |
8344642 |
taaaccatatttttgtgtcctatataattccatctctacatgtacgtcttgaaagagtaaagaaaacaacaacgtagggtcttggt |
8344557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 25 - 210
Target Start/End: Complemental strand, 8347488 - 8347303
Alignment:
| Q |
25 |
tgtcagatcatgaaaaaattaatttaccaactcaatccaatatttgtttccaatatttttcttgagtcgggcttgtttaaagtatagcttgactgacaag |
124 |
Q |
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| T |
8347488 |
tgtcaaatcatgaaaaaattaatttaccaactcaatccaatatttgtttccaatatttctcttgagtcgggcttgtttaaagtatagcttgactgacaag |
8347389 |
T |
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| Q |
125 |
taaaccatattattgtgacctatataattccatctctacatgtacgtcttgaaagagtaaagaaaacaacaacgtagagtcttggt |
210 |
Q |
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| T |
8347388 |
taaaccatatttttgtgacctatataattccatctctacatgtccgtcttgaaagagtaaagaagacaacaacgtagagtcttggt |
8347303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 180
Target Start/End: Complemental strand, 8330931 - 8330777
Alignment:
| Q |
25 |
tgtcagatcatgaaaaaattaatttaccaactcaatccaatatttgtttccaatatttttcttgagtcgggcttgtttaaagtatagcttgactgacaag |
124 |
Q |
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|||||||||||||| || ||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
8330931 |
tgtcagatcatgaagaa-ttaatttacaaactcaatccaatatttgtttccattatttttcttgagtcgggcctgtttaaagtatagcttgactgacaag |
8330833 |
T |
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| Q |
125 |
taaaccatattattgtgacctatataattccatctctacatgtacgtcttgaaaga |
180 |
Q |
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| T |
8330832 |
taaaccatatttttgtgacctatataatttcatctctacatgtatgtcttgaaaga |
8330777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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