View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20922_high_3 (Length: 307)
Name: NF20922_high_3
Description: NF20922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20922_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 27 - 197
Target Start/End: Complemental strand, 8525478 - 8525319
Alignment:
| Q |
27 |
gaaaaaccataactgaatattgtttttgaaaatattgtatttccaatttggatataaatatagacgttgggttccttaaaatatcatccacacttagttt |
126 |
Q |
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| T |
8525478 |
gaaaaacaatcactaaatattgtttttgaaaatattgtattttcaatttggatataaatatagacgttgtgttccttaaaatatcatccacacttagtt- |
8525380 |
T |
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| Q |
127 |
tcaattgatcttcattcacataaaccatttggtaacactttccacaaaatcatatattcataatggtgtgg |
197 |
Q |
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| T |
8525379 |
----------ttcattcacataaaccatttggtaacactttccacaaaatcatatattcataatggtgtgg |
8525319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 265 - 296
Target Start/End: Complemental strand, 8525251 - 8525220
Alignment:
| Q |
265 |
gccatcattatgagagctctgctttgcttcat |
296 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
8525251 |
gccatcattatgagagctctgctttgcttcat |
8525220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 70 - 176
Target Start/End: Original strand, 25520646 - 25520752
Alignment:
| Q |
70 |
caatttggatataaatatagacgttgggttccttaaaatatcatccacacttagttttcaattgatcttcattcacataaaccatttggtaacactttcc |
169 |
Q |
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|||||||| ||||||||| |||||| || |||| || ||||||||||||| ||||| |||| | |||||||||||||||||||| |||||||||||| |
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| T |
25520646 |
caatttggctataaatatttacgttgtgtcccttggcatttcatccacacttacttttctattgtttttcattcacataaaccatttagtaacactttcc |
25520745 |
T |
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| Q |
170 |
acaaaat |
176 |
Q |
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| T |
25520746 |
aaaaaat |
25520752 |
T |
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