View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20922_low_1 (Length: 497)
Name: NF20922_low_1
Description: NF20922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20922_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 9 - 481
Target Start/End: Complemental strand, 7459625 - 7459174
Alignment:
| Q |
9 |
agattatactccaaccaaacactaagttgtgaatcaactccaaccaagtatttttcaccaacttacttatccaaccaaacgcaataggtgattataccga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
7459625 |
agattatactccaaccaaacactaagttgtgaatcaactccaaccaagtatttttcaccaacttacttatccaaccaaacgtaatagatgattataccga |
7459526 |
T |
|
| Q |
109 |
taaactaaagcaaatacaaaagaatgtatatgatttaattaataaggataataaataaactctcgtaagaattgagataagggtatgctcaaaagaaata |
208 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7459525 |
taatctaaagcaaatacaaaagaatgtatatgatttaattaataaggataataaatacactctcgtaagaattgagataagggtatgctcagaagaaata |
7459426 |
T |
|
| Q |
209 |
acatgtcaaattcttaggaggaagtagtgttttagatatagataatgcattcataaaacatgtccaattaaaagagattttctttctaacaatcatctca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7459425 |
acatgtcaaattcttaggaggaagtagtgttttagatatagataatgcattcataaaacatgtccaattaaaagagattttctttctaacaatcatctca |
7459326 |
T |
|
| Q |
309 |
aacattccatatcaagtgaaatatcttaaacttaatcgataaggttgaaaggataatcgatcactgtgaactatctttgctttttatgaagtttatggta |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
7459325 |
aacattccatatcaagtgaaatatcttaaacttaatc---------------------gatcactattaactatctttgctttttatgaagcttatggta |
7459247 |
T |
|
| Q |
409 |
caaaaggcgacaatagaatcaatttcaaaatagttaaaaatcaagaaagatgaaccaacatccatcaagaaat |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7459246 |
caaaaggcgacaatagaatcaatttcaaaatagttaaaaatcaagaaagatgaaccaacatccatcaagaaat |
7459174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 98
Target Start/End: Complemental strand, 17336615 - 17336542
Alignment:
| Q |
18 |
tccaaccaaacactaagttgtgaatcaactccaaccaagtatttttcaccaacttacttatccaaccaaacgcaataggtg |
98 |
Q |
| |
|
|||||||||| |||||||||||||||| ||||||||||| |||||||||||||||| ||||||| ||||||||| |
|
|
| T |
17336615 |
tccaaccaaagactaagttgtgaatca-------ccaagtattttacaccaacttacttatcaaaccaaatacaataggtg |
17336542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University