View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20922_low_2 (Length: 384)

Name: NF20922_low_2
Description: NF20922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20922_low_2
NF20922_low_2
[»] chr7 (1 HSPs)
chr7 (23-384)||(46557050-46557410)


Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 23 - 384
Target Start/End: Complemental strand, 46557410 - 46557050
Alignment:
Q  23 gaagaacaacaattacaacctctcatgtgcaaggtaaatcaaacattcattcattcctctgcatgcggttttaataactctcttttactacttctaacat 122  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46557410 gaagaacaacaattacaacctctcatgtgcaaggtaaatcaaacattcattcattcctctgcatgcggttttaataactctcttttactacttctaacat 46557311  T
Q  123 acgtctctgttcttgttcttgttctttcagagctgtacgttaagagtctccattcattgtcaaggttgcatgagaaaagtcaaaaaagtcctccaaagca 222  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46557310 acgtctctgttc--gttcttgttctttcagagctgtacgttaagagtctccattcattgtcaaggttgcatgagaaaagtcaaaaaagtcctccaaagca 46557213  T
Q  223 tagatggtaacaaa-tcaataacattcaaaactcaatatatgttattttttgttttcatttcaaaactcttgttaatattgttgttaaatcaggtgttta 321  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46557212 tagatggtaacaaaatcaataacattcaaaactcaatatatgttattttttgttttcatttcaaaactcttgttaatattgttgttaaatcaggtgttta 46557113  T
Q  322 tcaaacaactattgatttgaagcaacaaaaagtagaagtaaaggggactgtcgacaccgatac 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46557112 tcaaacaactattgatttgaagcaacaaaaagtagaagtaaaggggactgtcgacaccgatac 46557050  T

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