View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20922_low_4 (Length: 296)
Name: NF20922_low_4
Description: NF20922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20922_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 255; Significance: 1e-142; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 26 - 280
Target Start/End: Complemental strand, 37915929 - 37915675
Alignment:
| Q |
26 |
tctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaa |
125 |
Q |
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| T |
37915929 |
tctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaa |
37915830 |
T |
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| Q |
126 |
gtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactctt |
225 |
Q |
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| T |
37915829 |
gtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactctt |
37915730 |
T |
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| Q |
226 |
gaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatctttt |
280 |
Q |
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| T |
37915729 |
gaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatctttt |
37915675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 26 - 281
Target Start/End: Complemental strand, 37907776 - 37907524
Alignment:
| Q |
26 |
tctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaa |
125 |
Q |
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|||||||||||||||||||||||||||| | ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
37907776 |
tctctacaatcagaaagagaaatcgaacggaacgaatcaatatgcactgcatcagatttctttggttttccccacccaaaatcagtctcacaaacatcaa |
37907677 |
T |
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| Q |
126 |
gtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactctt |
225 |
Q |
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| T |
37907676 |
gtttaggtgacccagcaaccactacaaatgagttaccaggttttaataattccatataatcaggtatcaacgtttcagcttctaacaaagcatcactctt |
37907577 |
T |
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| Q |
226 |
gaaatctcttatcttccgttcaatagcatttgccgccacaagaataccatcttttt |
281 |
Q |
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| T |
37907576 |
aaaatctcttatcttcttttaaatagcatttgctg---caacaataccatcttttt |
37907524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 26 - 241
Target Start/End: Original strand, 37960266 - 37960481
Alignment:
| Q |
26 |
tctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaa |
125 |
Q |
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|||||||||||||||||||||||||||| ||||||||||| ||| || |||| |||||||| || || |||||||||||||| |||||||||||| | | |
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| T |
37960266 |
tctctacaatcagaaagagaaatcgaaccggacgaatcaagatgaacagcatcagatttcttaggcttcccccacccaaaatctgtctcataaacagcca |
37960365 |
T |
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| Q |
126 |
gtttaggcgacccagaaaccattttaacagagttacctggttttattatttccctataatcaggcatcaacgtttcaactcccaacaaggcatcactctt |
225 |
Q |
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||| || || |||| ||||| | ||||| ||||| |||||| |||||||||||||||| |||||| |||||| |||| ||||| |||| |||||| |
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| T |
37960366 |
atttcggtgaaccagcaaccacagttacagacttaccaggttttgacatttccctataatcagacatcaatgtttcagctcctaacaaagcatgactctt |
37960465 |
T |
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| Q |
226 |
gaaatctcttatcttc |
241 |
Q |
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|||| |||||||||| |
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| T |
37960466 |
taaatgtcttatcttc |
37960481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 121
Target Start/End: Original strand, 37954458 - 37954552
Alignment:
| Q |
27 |
ctctacaatcagaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaaca |
121 |
Q |
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||||||||||||||||||||||||||| ||| ||||||| ||| ||| |||| |||||||| || || ||||| |||||||| |||||||||||| |
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| T |
37954458 |
ctctacaatcagaaagagaaatcgaaccggatgaatcaagatgaactgcatcagatttcttaggcttcccccatccaaaatctgtctcataaaca |
37954552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 132
Target Start/End: Complemental strand, 3784063 - 3783968
Alignment:
| Q |
37 |
agaaagagaaatcgaactggacgaatcaatatgcactacatcggatttctttggttttccccacccaaaatcagtctcataaacatcaagtttagg |
132 |
Q |
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||||| |||||||||| |||||||||| ||| ||| |||| ||||| || || || |||||||| || ||||||||||||||||||| |||||| |
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| T |
3784063 |
agaaatagaaatcgaagacgacgaatcaagatgaactgcatcagattttttaggcttcccccacccgaagtcagtctcataaacatcaaatttagg |
3783968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 275
Target Start/End: Complemental strand, 3783880 - 3783822
Alignment:
| Q |
217 |
atcactcttgaaatctcttatcttccgttcaatagcatttgccgccacaagaataccat |
275 |
Q |
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| T |
3783880 |
atcactcttgaaatctcttatcttcctttcgataccatttgcagccgcaacaatcccat |
3783822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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