View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20923_high_3 (Length: 256)
Name: NF20923_high_3
Description: NF20923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20923_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 6261837 - 6261605
Alignment:
| Q |
18 |
aatctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaacccataaatcctctcttcccataaccatctccttaactttcttc |
117 |
Q |
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| T |
6261837 |
aatctctttaacaagagttgttttcccagatccaccaatcccatgaataccaacaacccataaatcctctcttcccataaccatctccttaactttcttc |
6261738 |
T |
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| Q |
118 |
ttccccaaatccaaaccaacactcaaactcaaattcccataattaccctcaacccaattctcatcttcctccatacaagacctcacagcttcctgcaccc |
217 |
Q |
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| T |
6261737 |
ttccccaaatccaaaccaacactcaaactcaaattcccataattaccctcaacccaattctcatcttcctccatacaagacctcacagcttcctgcaccc |
6261638 |
T |
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| Q |
218 |
accctccacctcccacgccaatcttcatctcac |
250 |
Q |
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| T |
6261637 |
accctccacctcccacgccaatcttcatctcac |
6261605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 29 - 168
Target Start/End: Complemental strand, 6270838 - 6270699
Alignment:
| Q |
29 |
caagagttgttttcccagatccaccaatcccatgaataccaacaacccataaatcctctcttcccataaccatctccttaactttcttcttccccaaatc |
128 |
Q |
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||||||| |||||||||||||||||||||||| ||| ||||||| || ||||| | ||||| | |||||| ||| |||| || |||||||| || || |
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| T |
6270838 |
caagagtagttttcccagatccaccaatcccagaaattccaacaagacaaaaatctttccttccaacaaccatttccataaccttattcttcccaaactc |
6270739 |
T |
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| Q |
129 |
caaaccaacactcaaactcaaattcccataattaccctca |
168 |
Q |
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| T |
6270738 |
caaaccaaaactcaaatccaaattccccaaactaccctca |
6270699 |
T |
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