View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20923_high_5 (Length: 227)
Name: NF20923_high_5
Description: NF20923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20923_high_5 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 9267920 - 9267700
Alignment:
| Q |
7 |
cctccaaccacaactcctctcacggtggaaagcatccaaggatgccaccgcttgcttcgtcggagcattgcggtagagttgctgaaaggagcgacaagtt |
106 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||| |||||| ||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
9267920 |
cctccaaccacaactcctgtcacggtggaaagcatccagggatgctaccgctcgcttcgtcggagcattgggggagagttgctgaaaggagcgacaagtt |
9267821 |
T |
|
| Q |
107 |
tctgcatcggagctgcattggtgagtgccaagtcatattatgtttttcaatttttagtttcttaaactttacaagttaactcacaattcatcttgcagac |
206 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9267820 |
tttgcatcggagctgcattggtgagtgccaagtcatattctgtttttcaatttttagtttcttaaactttacaagttaactcacaattcatcttgcagac |
9267721 |
T |
|
| Q |
207 |
ttatttgatcaagaagaatca |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
9267720 |
ttatttgatcaagaagaatca |
9267700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 7 - 227
Target Start/End: Complemental strand, 9263640 - 9263421
Alignment:
| Q |
7 |
cctccaaccacaactcctctcacggtggaaagcatccaaggatgccaccgcttgcttcgtcggagcattgcggtagagttgctgaaaggagcgacaagtt |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| | |||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9263640 |
cctccaaccacaactcctctcacggtggaaagcatccagggattctaccgctcgcttcgtcggagcattgcggtagagttgctgaaaggagcgacaagtt |
9263541 |
T |
|
| Q |
107 |
tctgcatcggagctgcattggtgagtgccaagtcatattatgtttttcaatttttagtttcttaaactttacaagttaactcacaattcatcttgcagac |
206 |
Q |
| |
|
| |||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
9263540 |
tttgcatcggagctgcattggtaagtgccaagtcatattctgtttttcaatttttagtttcttaaactttacaagttaac-cacaattcatcttgcagac |
9263442 |
T |
|
| Q |
207 |
ttatttgatcaagaagaatca |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
9263441 |
ttatttgatcaagaagaatca |
9263421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 9262984 - 9263204
Alignment:
| Q |
7 |
cctccaaccacaactcctctcacggtggaaagcatccaaggatgccaccgcttgcttcgtcggagcattgcggtagagttgctgaaaggagcgacaagtt |
106 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||||| |||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9262984 |
cctccaaccacaactcctctcacggtgaaaagaatccagggatgctaccgctcgctttgtcggagcattgcggtagagttgctgaaaggagcgacaagtt |
9263083 |
T |
|
| Q |
107 |
tctgcatcggagctgcattggtgagtgccaagtcatattatgtttttcaatttttagtttcttaaactttacaagttaactcacaattcatcttgcagac |
206 |
Q |
| |
|
| | |||| ||||| |||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9263084 |
ttttcatccgagctacattggtgagtgccaattcatattctgttttttaatttttagtttcttaaactttacaagttaactcacaattcatcttgcagac |
9263183 |
T |
|
| Q |
207 |
ttatttgatcaagaagaatca |
227 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
9263184 |
ttatttgatcaagaagaatca |
9263204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 121
Target Start/End: Original strand, 9267518 - 9267632
Alignment:
| Q |
7 |
cctccaaccacaactcctctcacggtggaaagcatccaaggatgccaccgcttgcttcgtcggagcattgcggtagagttgctgaaaggagcgacaagtt |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||| |||||| |||| |||| |||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
9267518 |
cctccaaccacaactcctctcaaggtggaaagcatccagggatgctaccgctcgcttagtcgaagcattgcggaagagttactgaaaggagcgacaagtt |
9267617 |
T |
|
| Q |
107 |
tctgcatcggagctg |
121 |
Q |
| |
|
| |||||| |||||| |
|
|
| T |
9267618 |
tttgcatcagagctg |
9267632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University