View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20923_high_6 (Length: 221)
Name: NF20923_high_6
Description: NF20923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20923_high_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 10 - 221
Target Start/End: Complemental strand, 6271019 - 6270808
Alignment:
| Q |
10 |
catcatcaaaaatggaaactaagaaccaatcaacaagacaacaaaacaattaatgattaactttaaagatagcatgtttgaataattcaccaccctaaat |
109 |
Q |
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| T |
6271019 |
catcatcaaaaatggaaactaagaaccaatcaacaagacaacaaaacaattaatgatttactttaaagatagcatatttgaataattcaccaccctaaat |
6270920 |
T |
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| Q |
110 |
agtaaaaactagattatcaaatgtaacaatgaatagattatcacttacttctcacttgttcatctctacaaatctctctggcaagagtagttttcccaga |
209 |
Q |
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| T |
6270919 |
aataaaaactagattatcaaatgtaacaatgaatagattatcacttacctctcacttgttcatctctacaaatctctctggcaagagtagttttcccaga |
6270820 |
T |
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| Q |
210 |
tccaccaatccc |
221 |
Q |
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| T |
6270819 |
tccaccaatccc |
6270808 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 6261877 - 6261796
Alignment:
| Q |
140 |
gaatagattatcacttacttctcacttgttcatctctacaaatctctctggcaagagtagttttcccagatccaccaatccc |
221 |
Q |
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|||||||| ||||||||| |||||||||||||||| ||||||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
6261877 |
gaatagatcatcacttacatctcacttgttcatctttacaaatctctttaacaagagttgttttcccagatccaccaatccc |
6261796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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