View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20923_low_1 (Length: 712)
Name: NF20923_low_1
Description: NF20923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20923_low_1 |
 | |
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| [»] scaffold0147 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 17 - 705
Target Start/End: Complemental strand, 25197894 - 25197223
Alignment:
| Q |
17 |
tgaatgacagtaagttgacgacagagagaagcgaaactttgacagaatgagagacaatatcaccttcaattctatcatgcctaaatgttgtccgggacag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
25197894 |
tgaatgacagtaagttgacgacagagagaatcgaaactttgacagaatgagagacaatatcaccttcaattctatcatgcctaaatgttgcccgggacag |
25197795 |
T |
|
| Q |
117 |
acacgtgaaccgattccaaatggcatataagcttgtggaaacttgcaggatccaagcacaccatttgaaaatctttcaggtttgaattcgtgtgcatcga |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25197794 |
acacgtgaaccgattccaaatggcatataagcttgtggaaacttgcaggatccaagcacaccatttgaaaatctttcaggtttgaattcgtgtgcatcga |
25197695 |
T |
|
| Q |
217 |
ccccccatatatccttgtcttcctgaaatatcgggattggaatctgaatagtgattccttttggaattttgataccttttaaatcataatcttttaatgt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25197694 |
ccccccatatatccttgtcttcctgaaatatcgggattggaatctgaatagtgattccttttggaattttgataccttttaaatcataatcttttaatgt |
25197595 |
T |
|
| Q |
317 |
tgttcttgcggcaaacaatacaggtgaataaagccttaaagtctcttgaatcaccattgttaactgcaaaataaaacaaaattttgatagttatttactg |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25197594 |
tgttcttgcggcaaacaatacaggtgaataaagccttaaagtctcttgaatcaccattgttaactgcaaaataaaacaaaattttgatagttatttactg |
25197495 |
T |
|
| Q |
417 |
gatgcatgcataagaatgttaatgaagctttgaaaagatgtagtacaattggattgataattgtgaccaaaattgtgacatgattaatatgaagtgcaag |
516 |
Q |
| |
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||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
25197494 |
gat----gcataagaatgttaatgaagctatgaaaagatgtagtacaattgtattgat------------aattgtgacatgattaatatgaagtgcaag |
25197411 |
T |
|
| Q |
517 |
ggatgaaatatattttatggaaacatgaaattttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaact |
616 |
Q |
| |
|
|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25197410 |
ggatgaaatata-tttatggaaacatgtaattttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaact |
25197312 |
T |
|
| Q |
617 |
tcaagtacctctgcacgagcacggtcttgccaatcttggtatttagccaacaatactaagcaccatgttgatgtaattgcagtattatc |
705 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
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| T |
25197311 |
tcaagtacctctgcacgagcacggtcttgccaatcttggtatttagccaacaatattaagcaccatgttgatgtaattgcagtagtatc |
25197223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 384
Target Start/End: Complemental strand, 1763430 - 1763063
Alignment:
| Q |
17 |
tgaatgacagtaagttgacgacagagagaagcgaaactttgacagaatgagagacaatatcaccttcaattctatcatgcctaaatgttgtccgggacag |
116 |
Q |
| |
|
||||||||| ||| |||| || |||||||| ||||||| ||| |||||||||||| |||||||||||||| | ||| ||| ||| ||||| ||| |
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| T |
1763430 |
tgaatgacaataacttgatgatagagagaactgaaacttcaacaaaatgagagacaagatcaccttcaattcaaccatagctagatgctgtcctaaacat |
1763331 |
T |
|
| Q |
117 |
acacgtgaaccgattccaaatggcatataagcttgtggaaacttgcaggatccaagcacaccatttgaaaatctttcaggtttgaattcgtgtgcatcga |
216 |
Q |
| |
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||||| | || |||||||||||||| ||| ||||||||| |||||| | |||| |||| ||||||| ||||||||| || ||||| | |||||||| |
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| T |
1763330 |
acacgaggtcccattccaaatggcatgtaaacttgtggaatcttgcatgctccatgcactccatttgcaaatctttccggattgaacttatgtgcatcat |
1763231 |
T |
|
| Q |
217 |
ccccccatatatccttgtcttcctgaaatatcgggattggaatctgaatagtgattccttttggaattttgataccttttaaatcataatcttttaatgt |
316 |
Q |
| |
|
||||| | || ||||| || ||||| || |||||||| |||| | | |||||||||||||||| ||||||||| |||| | |||| || | |
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| T |
1763230 |
gtccccaaagctctgggtcttgatgcaatattggcattggaatttgaagattcattccttttggaatttggatacctttgaaattaatgtcttcaaaagc |
1763131 |
T |
|
| Q |
317 |
tgttcttgcggcaaacaatacaggtgaataaagccttaaagtctcttgaatcaccattgttaactgca |
384 |
Q |
| |
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||| | | | ||| | |||| ||||||||| || |||||||||||||||||||||||||||| |
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| T |
1763130 |
ctgtctaacaaccgataatgctggtggataaagcctcaatgtctcttgaatcaccattgttaactgca |
1763063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 1e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 19208427 - 19208058
Alignment:
| Q |
17 |
tgaatgacagtaagttgacgacagagagaagcgaaactttgacagaatgagagacaatatcaccttcaattctatcatgcctaaatgttgtccgggacag |
116 |
Q |
| |
|
||||||||||||| ||||||| ||||||| ||||||||||||||| ||||| ||||| | ||||||||||||||||||| |||||| ||||| |||||| |
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| T |
19208427 |
tgaatgacagtaacttgacgaaagagagacgcgaaactttgacaggatgagcgacaaaaacaccttcaattctatcatggataaatgctgtccaggacag |
19208328 |
T |
|
| Q |
117 |
acacgtgaaccgattccaaatggcatataagcttgtggaaacttgcaggatccaagcacaccatttgaaaatctttcaggtttgaattcgtgtgcatcga |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||| ||||| |||||||||||| |
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|
| T |
19208327 |
acacgggaaccgattccaaatggcatataagcttgtggaatcttgcaggctccaagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcgg |
19208228 |
T |
|
| Q |
217 |
ccccccatatatccttgtcttcctgaaatatcgggattggaatctgaatagtgattccttttggaattttgataccttttaaatcataatcttttaatgt |
316 |
Q |
| |
|
|||||| ||||| |||||| || ||||||| ||||||||||| ||| | ||||||||||||| ||||||||||||||||| | ||||| |||| |
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|
| T |
19208227 |
gcccccagatatcaatgtcttgttgcaatatcgcaattggaatctgcatattaattccttttggaactttgataccttttaaattaatatcttggaatga |
19208128 |
T |
|
| Q |
317 |
tgttcttgcggcaaacaatacaggtgaataaagccttaaagtctcttgaatcaccattgttaactgcaaa |
386 |
Q |
| |
|
|||||| | | ||| | | | |||| ||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
19208127 |
tgttctggtgataaatactgctggtggataaagcctcaaagtctcttgaatcaccatggttaactgcaaa |
19208058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 548 - 705
Target Start/End: Complemental strand, 19207778 - 19207621
Alignment:
| Q |
548 |
tttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgcc |
647 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| | || || |||||||| ||||||||||||||||| ||||||| |
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|
| T |
19207778 |
tttggtgtaaaacataccgttttcatggttctaagtatacttgcatctggattaccatttccgcatacttcaagcacctctgcacgagcacgatcttgcc |
19207679 |
T |
|
| Q |
648 |
aatcttggtatttagccaacaatactaagcaccatgttgatgtaattgcagtattatc |
705 |
Q |
| |
|
|||||||||||||||| ||||| | ||||||||| | |||||||||||||||| |||| |
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|
| T |
19207678 |
aatcttggtatttagctaacaacattaagcaccaagatgatgtaattgcagtagtatc |
19207621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 158; Significance: 1e-83; HSPs: 2)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 17 - 386
Target Start/End: Complemental strand, 10687 - 10318
Alignment:
| Q |
17 |
tgaatgacagtaagttgacgacagagagaagcgaaactttgacagaatgagagacaatatcaccttcaattctatcatgcctaaatgttgtccgggacag |
116 |
Q |
| |
|
||||||||||||| |||| || ||||||| |||||||||||||||| || ||||| | ||||||||||||||||||| |||||| ||||| |||||| |
|
|
| T |
10687 |
tgaatgacagtaacttgatgaaagagagacatgaaactttgacagaataagcgacaaaaacaccttcaattctatcatggataaatgctgtcctggacag |
10588 |
T |
|
| Q |
117 |
acacgtgaaccgattccaaatggcatataagcttgtggaaacttgcaggatccaagcacaccatttgaaaatctttcaggtttgaattcgtgtgcatcga |
216 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
10587 |
acacgagaaccgattccaaatggcatataagcttgtggaatcttgcaggctctaagcacaccatttgcaaatctttcaggattgaactcgtgtgcatcgg |
10488 |
T |
|
| Q |
217 |
ccccccatatatccttgtcttcctgaaatatcgggattggaatctgaatagtgattccttttggaattttgataccttttaaatcataatcttttaatgt |
316 |
Q |
| |
|
||||||| ||||| |||| | ||| ||||| |||||||||||||||||| | ||||||||||||| |||||||||||||| | | ||||| || | |
|
|
| T |
10487 |
ccccccaaatatcaatgtcatgctgcaatattgggattggaatctgaatattcattccttttggaactttgataccttttatgttaatatcttggaaagc |
10388 |
T |
|
| Q |
317 |
tgttcttgcggcaaacaatacaggtgaataaagccttaaagtctcttgaatcaccattgttaactgcaaa |
386 |
Q |
| |
|
|||||| | | ||| | | | || | ||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
10387 |
tgttctggtgagaaatactgctggcggataaagcctcaaagtctcttgaatcaccatggttaactgcaaa |
10318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 548 - 683
Target Start/End: Complemental strand, 10084 - 9949
Alignment:
| Q |
548 |
tttggtgtaaaacataccgttttcatttttctaaggttacttgcatctagattaccgtctcgacaaacttcaagtacctctgcacgagcacggtcttgcc |
647 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| || |||||||||||||| | | || |||||||||||| ||||| |||||| |||| ||||||| |
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|
| T |
10084 |
tttggtgtaaaacgtaccgttttcatgcttctaagtatatttgcatctagattatcatttccacaaacttcaagcacctccgcacgaacacgatcttgcc |
9985 |
T |
|
| Q |
648 |
aatcttggtatttagccaacaatactaagcaccatg |
683 |
Q |
| |
|
||||||||||| |||| ||||| | ||||||||||| |
|
|
| T |
9984 |
aatcttggtatgtagctaacaacattaagcaccatg |
9949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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